Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30080 501 / 3e-178 Glycosyl hydrolase superfamily protein (.1) AT4G18340 496 / 4e-176 Glycosyl hydrolase superfamily protein (.1) AT1G32860 373 / 3e-127 Glycosyl hydrolase superfamily protein (.1) AT2G27500 356 / 2e-121 Glycosyl hydrolase superfamily protein (.1.2.3) AT5G42100 342 / 3e-115 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT3G15800 323 / 3e-108 Glycosyl hydrolase superfamily protein (.1) AT4G26830 323 / 1e-107 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 306 / 9e-101 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G26600 304 / 9e-101 Glycosyl hydrolase superfamily protein (.1.2) AT5G55180 304 / 6e-100 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042825 [exp] 655 / 0 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 546 / 0 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 543 / 0 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10008277 [exp] 375 / 2e-128 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 371 / 2e-126 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 363 / 6e-124 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 363 / 3e-123 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10001660 [exp] 358 / 2e-122 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 357 / 1e-121 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G084900 [exp] 556 / 0 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 553 / 0 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.011G152400 [exp] 393 / 2e-135 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 383 / 2e-131 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 382 / 2e-131 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G202400 [exp] 369 / 3e-126 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 357 / 1e-121 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.003G032600 [exp] 331 / 2e-111 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 322 / 3e-107 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.002G007300 [exp] 311 / 3e-102 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10028122 pacid=23166388 polypeptide=Lus10028122 locus=Lus10028122.g ID=Lus10028122.BGIv1.0 annot-version=v1.0 ATGCATCAACAATCCTCTTCTCACGAAATCTTTGTCGTCCTCGTCCTCCTTTTATCCCTCTCCCTCTCTTCAGATTACGGTGTCGTAAAGAGAGTAACAT CTCTCGGGATCAACTACGGGCAAGTAGGCAACAATCTGCCACAACCAGACAAGGTCATGGACCTCTTGGCTTCCCTCCGAGTCACCAAGACACGAATCTA CGACACCAATCCGCAAATCCTGACCGCATTCGCCAATTCTCAAATCGAACTAATCGTTACGGTCGAGAACCAAATGCTATCCACCCTAACCGACCCACAA CAAGCCTTCCAATGGGTCACAACTCACATCAAACCCTACTTCCCCGCTACCCGAATCACAGGCATTTCCGTTGGCAACGAAGTATTCACCGCGGAGAACG ACGATACAACCTTACTATCCAATCTAGTCCCTGCCATTGTCAACATACACACAGCCTTAGTCCAGCTCGGCCTAGACCGTTACATCCAGATCTCAACGGC ACATTCCCTCGCCGTACTCGACCAATCCTACCCTCCTTCTGCCGGCACATTCAAACAAGAAGTCTCCTCCGCAATGTCGCAATTCCTCCAATTCCTCTCC GTCACGAAATCCCCCTTCTGGATCAACGCTTACCCTTACTTTGCATACAAGGACGATCCAGCCACAATTCCGTTGGATTATGTGCTTTTTAATCCGAACC AAGGGATGGTCGATCCTTACACGGGGCTTCATTACGACAACATGTTGTATGCAATGGTTGACGCAGTCATATTCGCCATGGCGAAATTGGGCTTCGGCAG GATAGAGGTACGGGTATCAGAGACTGGTTGGCCGTCAAGGGGTGACGCTAATGAGGTTGGTGCCACGGTGCAGAATGCGGCGTCGTATAACAAGAATTTG TTACGGAGGCAGCTTGGTAACCAAGGGACTCCGTTGCGGCCCAGAAGAAGACTCGAGGTCTACCTGTTTGCTTTGTTTAATGAGGATATGAAGCCTGGGC CCACATCTGAGCGGAACTATGGGCTTTATCAGCCCGATCTTACTATGGTTTATAATGTTGGGCTTTCCGGCCCTACCGGCACTACTTCAACGGCCACATC CACCGCCAGTGTCTCTTCCTCGCCGGCTTCGAATTCTGTTTCATCAGCAGCCACTAAGGTAAATTAA
AA sequence Show only first row Show all	>Lus10028122 pacid=23166388 polypeptide=Lus10028122 locus=Lus10028122.g ID=Lus10028122.BGIv1.0 annot-version=v1.0 MHQQSSSHEIFVVLVLLLSLSLSSDYGVVKRVTSLGINYGQVGNNLPQPDKVMDLLASLRVTKTRIYDTNPQILTAFANSQIELIVTVENQMLSTLTDPQ QAFQWVTTHIKPYFPATRITGISVGNEVFTAENDDTTLLSNLVPAIVNIHTALVQLGLDRYIQISTAHSLAVLDQSYPPSAGTFKQEVSSAMSQFLQFLS VTKSPFWINAYPYFAYKDDPATIPLDYVLFNPNQGMVDPYTGLHYDNMLYAMVDAVIFAMAKLGFGRIEVRVSETGWPSRGDANEVGATVQNAASYNKNL LRRQLGNQGTPLRPRRRLEVYLFALFNEDMKPGPTSERNYGLYQPDLTMVYNVGLSGPTGTTSTATSTASVSSSPASNSVSSAATKVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	0	1
AT2G46630			unknown protein		Lus10030217 [exp]	1.4	0.9614
AT1G79480			Carbohydrate-binding X8 domain...		Lus10000278 [exp]	2.0	0.9581
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	2.0	0.9618
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	2.4	0.9588
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	3.2	0.9577
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	4.0	0.9529
AT3G26350			unknown protein		Lus10006464 [exp]	5.5	0.9447
AT3G20650			mRNA capping enzyme family pro...		Lus10010478 [exp]	6.6	0.9410
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	7.3	0.9552
AT1G79480			Carbohydrate-binding X8 domain...		Lus10001764 [exp]	7.5	0.9380

Compare expression of checked genes

Lus10028122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.