Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30010 974 / 0 Intron maturase, type II family protein (.1) AT5G46920 721 / 0 Intron maturase, type II family protein (.1) ATMG00520 47 / 4e-05 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042828 [exp] 837 / 0 AT1G30010 617 / 0.0 Intron maturase, type II family protein (.1) Lus10011050 [exp] 726 / 0 AT5G46920 1110 / 0.0 Intron maturase, type II family protein (.1) Lus10003020 [exp] 318 / 2e-101 AT5G46920 572 / 0.0 Intron maturase, type II family protein (.1) Lus10003019 [exp] 93 / 3e-22 AT5G46920 147 / 2e-42 Intron maturase, type II family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G132450 [exp] 1052 / 0 AT1G30010 988 / 0.0 Intron maturase, type II family protein (.1) Potri.003G086801 [exp] 746 / 0 AT5G46920 1150 / 0.0 Intron maturase, type II family protein (.1) Potri.001G147801 [exp] 745 / 0 AT5G46920 1140 / 0.0 Intron maturase, type II family protein (.1) Potri.007G062302 [exp] 44 / 0.0003 ATMG00520 1095 / 0.0 Intron maturase, type II family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0027 [flax] [poplar] RdRP PF00078 [flax] [poplar] RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) CL0359 [flax] [poplar] Intron-mat_II PF01348 [flax] [poplar] Intron_maturas2 Type II intron maturase
Representative CDS sequence Show only first row Show all	>Lus10028124 pacid=23166464 polypeptide=Lus10028124 locus=Lus10028124.g ID=Lus10028124.BGIv1.0 annot-version=v1.0 ATGTCGGCGAGGACCATCATCAAACACTTTCCTCAAACTTCCAGATACCTACCTCCTTTCCGCTCCCTATGCTCCCTCTCCCTTCAACAACAAGATCCCT ACTCCCTCCTCAAGGAAGATCCCGTTCAAATTTGCAGCTCAATCTGGGTGAAATCCTTCTCTTCCCTCCCGGACGCTACTTTCCCTAACCTCACAGGCTT CCTCTCAAAGCTCGATTTATGGGTTCTCGCTTATCAACGCACCTGCGCCCATGTTACCGGCGCTTTCCCTCCTCGCAACGCCCTCCACTCCTACACCCTC CATTCTCTACTTTCCTTGCGAGATGCCGTGGTTCACAGCCGCTTCAAATGGAACGACAAGCCTAACCAGCTCATCCGGAGCCCTAACGAGAAGCCGCATT CCAAACTCATCTCTAAGAGGAAGCTCAAAGCTATGCTTGATTCCCCTGGCCCTTGCTTCCAGGACAGGGTTGTGCAAGAGGTACTTCTTATGGTGATGGA GCCTTTTTTTGAAGCACGATTCTCCAGCAAGTCCCACGCGTTTCGTCCTGGGAGGAACGCTCATACGGTAATCAGAACCATCCGGAGTAATTTTGCTGGC TATCTTTGGTTTCTTAGAGGTGACATTAGTGAAATTTTGTCCCAAGTGGATCCTAGTGTTGTGATGGAATCGGTAGCTAAGGTTGTCAAGGATAGGAAAG TGTTGAATTTGCTAAAGAACGGGCTTAGAACACCGATTGTCTATCATCAATCTCGAAATAGCGGCAACGATGATGCGAAGAAAAAAAAAAGGAAGGCGAC TAAGAAGAGATTGCTGAAGGAAGGTGAGCCAAAACCTGACCCGTATTGGCTGAGAACATTCTACGATTTCGCTCCAGAGGAAGCATCAAAGGTACCAAAG TACGGTGCCTGTGGGATTTTGAGTCCATTACTTGCAAATGCGTGCCTTAATGATTTGGATAAAGAGATGGAAGAAATGATGGTAGCTTTCTTCAACCCCA ATAAGCTTGATTCCATATGGAAGGATTCGATCAATGACGGTTGTCACAATCCTTCTTGGCCGGAGTTTGTTCCTTCTAGTGGCCGGGAGAAGACGCGAAA AATGGATTACATTCGATATGGTGGTCATTTCCTGATCGGCATTCGGGGGCCAAGAGAGGAAGCAGTGCGGATTAGAAAGGAACTTATCGAGTTTTGTGAT AGGAAGTATGGGATCAGGTTGGATAATTCCAAAGTTGAGATTCAACATATAAGCAGAGGGATTCAGTTCCTTGATCATATAATCTGTCGCCGGGTGATAT ACCCCACACTTCGTTACACTGCTAGTGGAGGACAAATTGTGAGTGAAAAGGGTGTGGGGACTTTGCTCTCAGTTACAGCTAGCTTGCAGCAATGCATTCG TCAGTTTAGGCGCCTTTCGTTCGTTAAAGGTGATAAGGATCCCGAGCCTTTGCCGTGTACACCAATGCTTTACTCAGGTCAGGCTCATACGAATGCCCAG ATGAATAAGTTTCTTGAGACTATGGCTGACTGGTACAGGTACGCGGATAATAGGAAGAAGGTTGTTGGATTTTGTGCATATGTAATTCGTAGTTCGTTAG CGAAACTGTATGCTGCTAGGTATAGACTTAAATCACGAGCTAAGGTGTACAAGATTGCTTCACGTAATCTTAGTCGGCCACTGACAGAGCATAGTAATAA TTCTGCACCTGAATACTCTGATCTTTTGAGGATGGGGCTTGTTGATGCAATTCAAAGTGTTCAGTTCTCACACATGTCCCTGATTCCATCTTGTGATTAT TCTCCGTTTCCGACAAATTGGATTCCTGACCATGAACAGATCTTGAAGGAGTATATAAAACTTGAAGATCCAGACTTCTTTTGTAACTTGCACATGTCAA TAAAGCGTCGAGGCTTGAGTTTACCTCAAGATCAGATATCTGAGATTATCTGGGATTACAAGACTCTAGGCATATGGAGACAGCAGTTGCACTGGGTAAA CAAAGCTAGTAATGTTAATCAAGAATTGGGGGAGAAAGTATGA
AA sequence Show only first row Show all	>Lus10028124 pacid=23166464 polypeptide=Lus10028124 locus=Lus10028124.g ID=Lus10028124.BGIv1.0 annot-version=v1.0 MSARTIIKHFPQTSRYLPPFRSLCSLSLQQQDPYSLLKEDPVQICSSIWVKSFSSLPDATFPNLTGFLSKLDLWVLAYQRTCAHVTGAFPPRNALHSYTL HSLLSLRDAVVHSRFKWNDKPNQLIRSPNEKPHSKLISKRKLKAMLDSPGPCFQDRVVQEVLLMVMEPFFEARFSSKSHAFRPGRNAHTVIRTIRSNFAG YLWFLRGDISEILSQVDPSVVMESVAKVVKDRKVLNLLKNGLRTPIVYHQSRNSGNDDAKKKKRKATKKRLLKEGEPKPDPYWLRTFYDFAPEEASKVPK YGACGILSPLLANACLNDLDKEMEEMMVAFFNPNKLDSIWKDSINDGCHNPSWPEFVPSSGREKTRKMDYIRYGGHFLIGIRGPREEAVRIRKELIEFCD RKYGIRLDNSKVEIQHISRGIQFLDHIICRRVIYPTLRYTASGGQIVSEKGVGTLLSVTASLQQCIRQFRRLSFVKGDKDPEPLPCTPMLYSGQAHTNAQ MNKFLETMADWYRYADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRNLSRPLTEHSNNSAPEYSDLLRMGLVDAIQSVQFSHMSLIPSCDY SPFPTNWIPDHEQILKEYIKLEDPDFFCNLHMSIKRRGLSLPQDQISEIIWDYKTLGIWRQQLHWVNKASNVNQELGEKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	0	1
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	1.4	0.9197
AT3G62200			Putative endonuclease or glyco...		Lus10009982 [exp]	1.7	0.9123
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	2.8	0.9200
AT5G12220			las1-like family protein (.1.2...		Lus10036063 [exp]	3.2	0.9075
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10018770 [exp]	3.2	0.8968
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	4.2	0.9073
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033858 [exp]	4.7	0.8753
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	4.9	0.9090
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	5.3	0.9033
AT4G32420			Cyclophilin-like peptidyl-prol...		Lus10008079 [exp]	8.1	0.8834

Compare expression of checked genes

Lus10028124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.