Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18335 47 / 6e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G132400 [exp] 52 / 5e-09 AT4G18335 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028125 pacid=23166525 polypeptide=Lus10028125 locus=Lus10028125.g ID=Lus10028125.BGIv1.0 annot-version=v1.0 ATGAACGTCAAGATCCTCATCAATCTCTTCTTCTCCGCCTTCATCTTCTTCTTCATCCTCCTCATCGTCTCCGCCATCGTCGCTCTTCCTCCCAAGTCGG CCCACCAATCCACTCCACTCCCGCCTCGCCACATCATCGATCGTCATCACCACAGAACGCCGCCGCCGCCGACCACCAAGGAGGCCGCGGAGGCGCAGTA CCAGGTTTTCCACATCAAGAACACCGCACCCTTCTTCTTGGACAGACAATCGCCAGCTGCAGGCCGCCCCCACCGTCCGACCAAGCCTAGTACTGCTGCT CAACGGGCCAGGATCAACAGCAGCAAGAATAAGAAAAGAATCAAGACTGCGTCGTCTGGTTCCTCCTCCCCTGTCCCGATCAAGAAGAAGAAGAAGAAGA CGAAGAAGGGATCCAGTACTGCTAGGCCTTTCTCGGTAATGCTTCCGAAGGGATTGGTTCCTCCGTCCGGATCTTCACCGGCCTGCCATAATGACAAACC AGATACACAGCTCACTGTCGTTTACTCCTCCTGCCAGCAACCTTGA
AA sequence Show only first row Show all	>Lus10028125 pacid=23166525 polypeptide=Lus10028125 locus=Lus10028125.g ID=Lus10028125.BGIv1.0 annot-version=v1.0 MNVKILINLFFSAFIFFFILLIVSAIVALPPKSAHQSTPLPPRHIIDRHHHRTPPPPTTKEAAEAQYQVFHIKNTAPFFLDRQSPAAGRPHRPTKPSTAA QRARINSSKNKKRIKTASSGSSSPVPIKKKKKKTKKGSSTARPFSVMLPKGLVPPSGSSPACHNDKPDTQLTVVYSSCQQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18335			unknown protein		Lus10028125 [exp]	0	1
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10016287 [exp]	6.1	0.7349
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000177 [exp]	9.4	0.6472
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	18.3	0.6739
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001168 [exp]	20.1	0.6380
					Lus10036102 [exp]	21.5	0.6961
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10000017 [exp]	28.6	0.6448
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007046 [exp]	36.5	0.6342
AT3G59650			mitochondrial ribosomal protei...		Lus10022178 [exp]	49.9	0.6519
					Lus10030116 [exp]	53.5	0.6274
AT1G70780			unknown protein		Lus10009131 [exp]	56.2	0.6223

Compare expression of checked genes

Lus10028125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.