Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30000 115 / 3e-30 MNS3 alpha-mannosidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042830 [exp] 234 / 1e-74 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G132300 [exp] 188 / 6e-57 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028126 pacid=23166448 polypeptide=Lus10028126 locus=Lus10028126.g ID=Lus10028126.BGIv1.0 annot-version=v1.0 ATGTCGAAATCTCTTCCCTATTCGACTAAAGATTTGAACTACGACAACGCCAAATTCCGCCAACGATCGGTCGTTAAGGTGCTAACGCAGTCCTTGCTCA CCAAGAACAAGATGCGTGATTGTGCAAGCTTCAGTACGGGGAAGTTTCTTGCATTGTTGTTGATCTTTGGCTTCGGATATCTTATGTTAACACATTCAAG TACTGCTCACTCTGTTTCAGTTAGACTAGCTGATAAGTTGAGTGTTAATGGAGAAGCTAAGAATGTCACAGGAGAAAATGCTCGGTTTGGGGGAATTTGG AGGAAGCCACCAAGGCTCCCTCCTCGATTACCACCTGATGAGAAGGCCAGTCACAATGACAGTTCTAGTCATGAAGCAGCAAAGATTAATCTTGATTCGG GATGGGTGGACAGACAAAAAAAAGTAAAGGAGGCTTTTATCTATGCTTGGTCTGGCTACAGAAAGTATGCGATGGGTATGACGAATTGA
AA sequence Show only first row Show all	>Lus10028126 pacid=23166448 polypeptide=Lus10028126 locus=Lus10028126.g ID=Lus10028126.BGIv1.0 annot-version=v1.0 MSKSLPYSTKDLNYDNAKFRQRSVVKVLTQSLLTKNKMRDCASFSTGKFLALLLIFGFGYLMLTHSSTAHSVSVRLADKLSVNGEAKNVTGENARFGGIW RKPPRLPPRLPPDEKASHNDSSSHEAAKINLDSGWVDRQKKVKEAFIYAWSGYRKYAMGMTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028126 [exp]	0	1
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10021570 [exp]	2.8	0.8633
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	3.2	0.7834
AT1G03080			kinase interacting (KIP1-like)...		Lus10022079 [exp]	4.0	0.8367
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	5.9	0.8115
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10017160 [exp]	7.9	0.8231
AT5G28850			Calcium-binding EF-hand family...		Lus10027963 [exp]	8.5	0.8175
AT1G22730			MA3 domain-containing protein ...		Lus10012204 [exp]	9.5	0.8054
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	10.7	0.7520
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	11.4	0.7290
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	11.7	0.8056

Compare expression of checked genes

Lus10028126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.