Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30000 622 / 0 MNS3 alpha-mannosidase 3 (.1) AT1G51590 241 / 3e-75 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT3G21160 239 / 2e-73 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT5G43710 86 / 8e-18 Glycosyl hydrolase family 47 protein (.1) AT1G27520 85 / 1e-17 Glycosyl hydrolase family 47 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042830 [exp] 771 / 0 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10035727 [exp] 246 / 8e-76 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10037312 [exp] 243 / 8e-75 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10034820 [exp] 237 / 2e-72 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 183 / 9e-52 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10042143 [exp] 112 / 1e-26 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10004233 [exp] 93 / 1e-20 AT1G27520 515 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10041170 [exp] 89 / 8e-19 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10021888 [exp] 64 / 1e-10 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G132300 [exp] 681 / 0 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1) Potri.018G141100 [exp] 249 / 6e-77 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.008G007500 [exp] 235 / 6e-72 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.015G071400 [exp] 95 / 8e-21 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.012G076600 [exp] 94 / 2e-20 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 63 / 2e-10 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF01532 [flax] [poplar] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Lus10028127 pacid=23166518 polypeptide=Lus10028127 locus=Lus10028127.g ID=Lus10028127.BGIv1.0 annot-version=v1.0 ATGGGCAAGGGGCCTAACCCAGTTGTTTACTTGGATACTGCTAAAGACTTAGCTGATCGTCTGCTTTTGGCTTTTACTTCTAGTTCAACTCCTATTCCCT TCAGTGATGTTATTCTTCATGATCCATCAGCTCATCGAGCACCTGATGGGTTAAGTAGTACTTCAGAGGTTTCTACTTTACAGCTAGAGTTTAATTATCT CAGTACTCTTTCTGGTGATCCAAAGTACAGCATGGTAGCTATGAAGGTGTTGGAACACATGAAAGATCTCCAGAAGGTGGACGGCCTTGTTCCGATCTAC TATCTACATAAGGTGTGGGTCTCCCTTCTTTCCTTTCTTCCTTCCTTCCTCCCTTCATGTCCCGACTCTGGTCAGTTTAGTGGAGAAAATATCAGACTTG GATCTCGTGGTGACAGCTATTATGAGTACCTTATTAAGGTCTGGCTTCAGCAGGGGAGGAATAGAGATACTAAGTTTACATATCTTCATGATATGTATAC TGAAGCAATGAAAGGTGTAAGGCACCGACTTGTCAAGAAGTCGATCCCAAATGGTTTGGTGTTTGTAGGTGAACTGCCTTATGTACCAAATGGTGCTTTT AGTCCTAAGATGGATCACCTGGTGTGTTTTTTACCTGGTACACTTGCCCTTGGGGCCACTAAGGGATTTACCAAAGAGAAAGCAACGAATGAAAATTTGA TGACTTTTGAAGACTTTGAAAACTTAAAGCTTGCGGAAGACCTGGCAAAGACTTGCTTTGAGATGTATTCAGTTACTTCCACTGGTCTTGCCCCTGAAAT TGTTTATTTCCATACAGAGGAGTATTCTGAAGATGGCCTCGGTGGAGGGAACAAGAGTTCTGAGTATATTGACGACATCATCATAAAGCCTCTAGATCGT CATAATCTTTTGCGTCCAGAGACTGTTGAATCATTGTTTGTTTTGTACCGTATAACAGAAGACCCAAAATACCGAGAGTGGGGCTGGCAGATTTTTGAAG CATTTGAGAAGTATACAAAGGTCGATTCTGGTGGATACAGTTCTTTGGATGACGTAACTAACCTTCCTCCTCGAAGAAGAGACAAGATGGAGACCTTCTT TCTGGGTGAAACTTTGAAGTACTTGTACTTGCTGTTTGGGGATAGCTCTGTTATCCCATTAGACAAGTTTGTCTTTAACACAGAAGCTCATCCTTTTCCT ATCAAAGGAATGTGA
AA sequence Show only first row Show all	>Lus10028127 pacid=23166518 polypeptide=Lus10028127 locus=Lus10028127.g ID=Lus10028127.BGIv1.0 annot-version=v1.0 MGKGPNPVVYLDTAKDLADRLLLAFTSSSTPIPFSDVILHDPSAHRAPDGLSSTSEVSTLQLEFNYLSTLSGDPKYSMVAMKVLEHMKDLQKVDGLVPIY YLHKVWVSLLSFLPSFLPSCPDSGQFSGENIRLGSRGDSYYEYLIKVWLQQGRNRDTKFTYLHDMYTEAMKGVRHRLVKKSIPNGLVFVGELPYVPNGAF SPKMDHLVCFLPGTLALGATKGFTKEKATNENLMTFEDFENLKLAEDLAKTCFEMYSVTSTGLAPEIVYFHTEEYSEDGLGGGNKSSEYIDDIIIKPLDR HNLLRPETVESLFVLYRITEDPKYREWGWQIFEAFEKYTKVDSGGYSSLDDVTNLPPRRRDKMETFFLGETLKYLYLLFGDSSVIPLDKFVFNTEAHPFP IKGM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	0	1
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	1.4	0.8241
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	5.3	0.8005
AT1G22730			MA3 domain-containing protein ...		Lus10012205 [exp]	8.1	0.7415
AT3G60800			DHHC-type zinc finger family p...		Lus10009291 [exp]	8.8	0.7550
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	10.1	0.7941
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10007912 [exp]	12.1	0.7124
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10030042 [exp]	13.8	0.7658
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	14.4	0.7693
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021943 [exp]	16.3	0.7757
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	16.7	0.7888

Compare expression of checked genes

Lus10028127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.