Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46240 793 / 0 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 757 / 0 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT2G26650 590 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 567 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 563 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT4G22200 511 / 1e-170 AKT3, AKT2/3 potassium transport 2/3 (.1) AT4G32650 419 / 8e-138 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT3G02850 302 / 7e-91 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 284 / 4e-84 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G23980 69 / 8e-12 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042831 [exp] 1488 / 0 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10043298 [exp] 577 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 576 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 561 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 544 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 525 / 7e-176 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017766 [exp] 506 / 7e-174 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10013115 [exp] 521 / 9e-174 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10019944 [exp] 515 / 6e-172 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G132200 [exp] 976 / 0 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.018G071400 [exp] 593 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 586 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G031600 [exp] 574 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 520 / 1e-173 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.006G245000 [exp] 464 / 6e-155 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 460 / 2e-153 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 454 / 6e-151 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.006G154600 [exp] 324 / 4e-101 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.017G135400 [exp] 288 / 2e-85 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0030 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028128 pacid=23166433 polypeptide=Lus10028128 locus=Lus10028128.g ID=Lus10028128.BGIv1.0 annot-version=v1.0 ATGTTCTTCTCTTGCGCCAAGAGCTTCGTACAACGCTTCTTTACGGATGAGGTTCATACGGATAGTGTCCTCCATGGAAGCTTCTTCTCTAACGATCTCG TACCATCCCTTGGAGCCAGAATCAACCAGGAAATTGAACTCAGAAGACGCATTATTTCCCCTTACAATCCTCGGTACAGGGCTTGGCAAATGTGGCTGGT TGTTCTGGTCATTTACTCTGCATGGATCTCTCCATTTCAGTTTGCATTTCTGACTTACAAGAAAGACGGTCTTTTTGTTGTTGACAACATTGTCAATGGT TTCTTCGCCATTGATATTGTTCTCACCTTCTTTGTTGCCTATCTTGATAGCCAATCTTGCCTCCTCATCGATGACCCTAAAAAAATAGCAATTAGGTACA TATCTACCTGGTTTATCTTCGATGTCAGTTCGACTGCCCCATTTCTACCAGTGAGCCTTCTGTTCAGAGATCAAAGCAGTGAACTTGGATTCAAATTGCT GAACATGCTCCGTCTCTGGCGTCTCAGAAGAGTCAGCTCACTGTTTGCAAGGCTTGAGAAGGACATCCGCTTCAATTATTTCTGGACTCGTTGCACAAAG CTTACTTCTGTAACCCTATTTGCGGTACATTGTGCTGGATGTTTCAACTATCTAATTGCAGATAGATATCCTGACCCTAGAAGAACATGGATCGGTGCAG TAAACCCAAATTTCAAAGAAGACTCTCTGTGGAACAGATATGTTACGTCAATTTATTGGTCTATCACTACGTTAACTACAACTGGTTATGGAGATTTACA TGCTGAGAATCCAAGAGAGATGCTTTTTGATATATTCTACATGCTATTCAACTTGGGATTGACGTCTTACCTGATTGGAAACATGACCAATCTCGTTGTG CATTGGACCAGCCGGACAAGGAATTTTAGGGACATGGTCAGAGCTGCTTCAGAATTCGCCACTCGGAATCAGTTGCCGCCCCGTATACAGGACCAAGTGA TATCACATTTATGTCTGAAATTCAAAACAGAAGGACTGCAGCAACAAGAGGCACTGAATGGCCTTCCAAAAGCCATTCGCTCGAGCATTTCACATTATCT CTTCTATCCCATTGTTCAAAATGTCTACCTATTCCAAGGGGTTCCACACGACTTCCTATTCCAGCTGGTCTCAGAAATGGAGGCTGAATATTTTCCACCA CGAGAAGATATCATATTGCAGAACGAAGCTCCAACTGACCTTTATATACTGGTGTCTGGAACGGTGATTTTCTTATCCTCAATTGACGGGCATGAACAAG TTATTGGAAAAGCAACTGCAGTAGACTTATTCGGGGAGATGGGAGTTTTATGTAACAAGCCTCAACCAGTGACTGTTAGGACGACCGAGCTTTCCCAGAT ATTGCGGCTCAGCAGAACTTCACTGATGAAAACCATTCAGACAAATGAAGAAGAAGAGCATAAAATAATGCAGAATCTTTTCACGAAATTGCGCGGGCCA GAAAGGACAACTTCTGAATGCGAAAACAACGCTGGAGGAATGATCCCTGCTAAGTGGAATGATGGAGGGCCTAAAGAAGGTAGTTATTCCATGGCAGGAC GTAAAGGATATTCGTATGGAGACAAATCAGTTAGGGAAACAAGGGGTGCATATTCGCAGTCAACAGAGTGTATATCTGAGAGTAAAGTAGGAGGGCAAAG ATTTACCAGACATAATGAAGATGTTCTCAATCGACAAACAGCGCTGCATGCTGCAGTGTCCAAGGGGCACACAGAAATCGTCAAGATGTTGCTTGAAGAT GGAGCAAATGCAAACAATCCAGATGATAGAGGGTGGACTCCAAAAGAACTCGCAGCACACCGTGGACACAAAAGCATATACGATCTTTTCGTAAGCTACG AAAATAAAAGGTCATTAAATGCACTTAAGACAGATTCCATCGAGGAGGAAACTGCAGCTGGTACTAAAGGTGTTCACAGAAAAAATGTTGAGAACAGCGG GGCCGATTCTTGCTGTCCCAATTCAGCAAAGGCAACTACAAATGCCACATCAAGCATTTCAAGCTATTTATATGACGTGGATGAGAAAAAATTTACAAAG AAGAGAGTCACCATTCATATGAAACACCAAGATGAAACAACATCCAGCCAATCGGGGAAATTAATTGTACTACCTAATTCCTTGGAAGAGCTGCTCAACA TTGCTGGTAAGATATCTTTAACCTCTAAAAGAGTCTGTGAGCTCAAACCTGCATAA
AA sequence Show only first row Show all	>Lus10028128 pacid=23166433 polypeptide=Lus10028128 locus=Lus10028128.g ID=Lus10028128.BGIv1.0 annot-version=v1.0 MFFSCAKSFVQRFFTDEVHTDSVLHGSFFSNDLVPSLGARINQEIELRRRIISPYNPRYRAWQMWLVVLVIYSAWISPFQFAFLTYKKDGLFVVDNIVNG FFAIDIVLTFFVAYLDSQSCLLIDDPKKIAIRYISTWFIFDVSSTAPFLPVSLLFRDQSSELGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTK LTSVTLFAVHCAGCFNYLIADRYPDPRRTWIGAVNPNFKEDSLWNRYVTSIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVV HWTSRTRNFRDMVRAASEFATRNQLPPRIQDQVISHLCLKFKTEGLQQQEALNGLPKAIRSSISHYLFYPIVQNVYLFQGVPHDFLFQLVSEMEAEYFPP REDIILQNEAPTDLYILVSGTVIFLSSIDGHEQVIGKATAVDLFGEMGVLCNKPQPVTVRTTELSQILRLSRTSLMKTIQTNEEEEHKIMQNLFTKLRGP ERTTSECENNAGGMIPAKWNDGGPKEGSYSMAGRKGYSYGDKSVRETRGAYSQSTECISESKVGGQRFTRHNEDVLNRQTALHAAVSKGHTEIVKMLLED GANANNPDDRGWTPKELAAHRGHKSIYDLFVSYENKRSLNALKTDSIEEETAAGTKGVHRKNVENSGADSCCPNSAKATTNATSSISSYLYDVDEKKFTK KRVTIHMKHQDETTSSQSGKLIVLPNSLEELLNIAGKISLTSKRVCELKPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10028128 [exp]	0	1
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10042831 [exp]	1.0	0.7871
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10011028 [exp]	8.7	0.7677
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	10.9	0.7677
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10000620 [exp]	16.4	0.6885
AT5G18610			Protein kinase superfamily pro...		Lus10040350 [exp]	17.6	0.7029
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	18.0	0.7366
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	18.8	0.7364
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10028317 [exp]	20.7	0.6913
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	22.8	0.6901
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10032004 [exp]	23.0	0.6670

Compare expression of checked genes

Lus10028128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.