Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34500 673 / 0 CYP710A1 cytochrome P450, family 710, subfamily A, polypeptide 1 (.1) AT2G34490 644 / 0 CYP710A2 cytochrome P450, family 710, subfamily A, polypeptide 2 (.1) AT2G28850 603 / 0 CYP710A3 cytochrome P450, family 710, subfamily A, polypeptide 3 (.1) AT2G28860 592 / 0 CYP710A4 cytochrome P450, family 710, subfamily A, polypeptide 4 (.1) AT1G05160 114 / 3e-27 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 104 / 9e-24 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G45340 97 / 3e-21 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 90 / 4e-19 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 88 / 2e-18 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT3G19270 85 / 2e-17 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042833 [exp] 681 / 0 AT2G34500 496 / 5e-175 cytochrome P450, family 710, subfamily A, polypeptide 1 (.1) Lus10033105 [exp] 115 / 3e-27 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10036671 [exp] 102 / 3e-23 AT1G05160 284 / 1e-90 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10043357 [exp] 100 / 2e-22 AT2G32440 643 / 0.0 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) Lus10028594 [exp] 99 / 1e-21 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 97 / 2e-21 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10018898 [exp] 94 / 4e-20 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 94 / 4e-20 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10033308 [exp] 93 / 5e-20 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131700 [exp] 734 / 0 AT2G34500 717 / 0.0 cytochrome P450, family 710, subfamily A, polypeptide 1 (.1) Potri.014G179100 [exp] 110 / 7e-26 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.013G161800 [exp] 107 / 1e-24 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.002G069600 [exp] 101 / 9e-23 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.012G071300 [exp] 100 / 2e-22 AT1G05160 285 / 9e-91 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.001G242600 [exp] 99 / 7e-22 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.019G080500 [exp] 97 / 2e-21 AT5G36110 456 / 7e-158 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G134000 [exp] 96 / 8e-21 AT5G36110 559 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.012G115000 [exp] 95 / 1e-20 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G133901 [exp] 95 / 1e-20 AT5G36110 526 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028129 pacid=23166513 polypeptide=Lus10028129 locus=Lus10028129.g ID=Lus10028129.BGIv1.0 annot-version=v1.0 ATGTCCTTCTTCTTCATTCTTCCTTATTTGTTTTCTTTCCTTTTCTTCCTCCTCCTCATTGAACAGATCTCCTACCTCCTCAAGAAACGGCACCTCCCCG GCCCGACTTTAGTCTTCCCTTTCCTCGGCAGCGCTATCTCTCTCGTCTCCGATCCCACCAAATTCTGGGACGCTCAATCCTCCCTCAGTGCCTCCCTCGG CTTCTCCGCCAACTACCTCGTCGGCAATTTCATCCTCTACATCCGCGACTCCGACATCTCCCAACTCGTTTTCTCCAATGTCCGCCCCGACGCTTTCAAA CTCGTCGGCCATCCCTTTGGCAAGAAGCTATTCGGCGAGCACAATTTGATTTACATGTTCGGCCAGGATCATAAGGACATCCGCCGTCAGATTGCTCCCA ATTTCACTCCTCGTGCTCTCTCCACCTACACCTCCTTACAGCAGATCATCATCCTCAAGCATTTGAAGCAATGGGAGAAGCTATGCTCCGACGACCCCAC CCGAACCATCTCCCTCCGTTTTCTTGCAAGGGATATGAACCTCGAGACCTCTCAGACTGTCTTCGTCGGGCCGTATCTAACTCAGGAGGCTAGGATTAGG TTTAAGGAGGATTATAATCTGTTCAATGTCGGCTCCATGAGCCTCCCCTTTGACCTCCCTGGCTTCGCCTTTCGGAAAGCGATTCGAGCCGTTGACCGCC TTGCCGCCACGCTGGCCGAATCCACGAAGCAGTGTAAGCAGAGGATAGGGAAAGGTGAGGAGGAGCCGACTTGCTTGGTGGATTTCTGGATGCAGGAGAC TCTGAGAGAAATAGCGGAGGCGAAAGCTGCCGGAAAGCCAGAGCCGTCTCATACCAGTGACACCGAAATCGGAGGCTTTTTATTCGATTTCCTCTTTGCT GCTCAGGACGCGTCGACTTCGTCAATTCTATGGGCGATTACGCTGCTGGATTCGCATCCGGAGGTGCTGGCAAAAGTGCGGGCTGAAGTGGAAGGCGTGT GGTCGCCTGAATCGGACGCGCTAATCACGGCGGAGCAGTTACGAGAGATGAAGTACACGCATATGGTGGCGCGTGAAGTGATAAGGTTCAGGCCTCCTGC AACGCTGGTCCCACACATGGCGATGAGGGACTTTCCGTTGACGGAGTCGTACACTGTACCCAAGGGGACGATCGTTTTCCCGTCGGTATACGACAGCTCG TTCCAAGGGTTCACGGAAGCAGGTCGGTTCGACCCGGAGCGGTTCTCGGAGGAGAGGAAGGAGGAGCAGATTTACAAGAAGAACTTTCTGGCGTTTGGAG CCGGGTCGCATCAGTGTGTGGGACAGAGGTATGCTCTGAACCATCTGGTTCTGTTCATCGCATTATTCAGCACGTTGCTGGATTGCAAGAGGATGAGAAC GGACGGCTGCGATGACATCGTTTACAACCCCACGATCTGTCCGAAGGATGGGTGCACTGTCACGCTGTCGAAGCGGTGTGCAATGTATCCGAAGCTGTCG TTAAGTTGA
AA sequence Show only first row Show all	>Lus10028129 pacid=23166513 polypeptide=Lus10028129 locus=Lus10028129.g ID=Lus10028129.BGIv1.0 annot-version=v1.0 MSFFFILPYLFSFLFFLLLIEQISYLLKKRHLPGPTLVFPFLGSAISLVSDPTKFWDAQSSLSASLGFSANYLVGNFILYIRDSDISQLVFSNVRPDAFK LVGHPFGKKLFGEHNLIYMFGQDHKDIRRQIAPNFTPRALSTYTSLQQIIILKHLKQWEKLCSDDPTRTISLRFLARDMNLETSQTVFVGPYLTQEARIR FKEDYNLFNVGSMSLPFDLPGFAFRKAIRAVDRLAATLAESTKQCKQRIGKGEEEPTCLVDFWMQETLREIAEAKAAGKPEPSHTSDTEIGGFLFDFLFA AQDASTSSILWAITLLDSHPEVLAKVRAEVEGVWSPESDALITAEQLREMKYTHMVAREVIRFRPPATLVPHMAMRDFPLTESYTVPKGTIVFPSVYDSS FQGFTEAGRFDPERFSEERKEEQIYKKNFLAFGAGSHQCVGQRYALNHLVLFIALFSTLLDCKRMRTDGCDDIVYNPTICPKDGCTVTLSKRCAMYPKLS LS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10028129 [exp]	0	1
AT2G24300			Calmodulin-binding protein (.1...		Lus10036301 [exp]	2.2	0.8881
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10017898 [exp]	9.9	0.8291
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10026007 [exp]	12.3	0.7840
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10022590 [exp]	13.2	0.8391
AT4G34150			Calcium-dependent lipid-bindin...		Lus10014088 [exp]	16.2	0.8852
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011098 [exp]	16.4	0.8662
AT1G78310			VQ motif-containing protein (....		Lus10010347 [exp]	23.7	0.8103
AT4G28300			Protein of unknown function (D...		Lus10018593 [exp]	32.9	0.7480
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030455 [exp]	36.0	0.8306
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10013805 [exp]	36.8	0.8560

Compare expression of checked genes

Lus10028129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.