Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29970 91 / 4e-22 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3) AT1G17080 69 / 9e-15 Ribosomal protein L18ae family (.1) AT1G53560 47 / 5e-07 Ribosomal protein L18ae family (.1) AT3G14600 40 / 0.0003 Ribosomal protein L18ae/LX family protein (.1) AT1G29965 39 / 0.0008 Ribosomal protein L18ae/LX family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005580 [exp] 78 / 4e-18 AT1G17080 190 / 2e-62 Ribosomal protein L18ae family (.1) Lus10013712 [exp] 74 / 8e-17 AT1G17080 186 / 6e-61 Ribosomal protein L18ae family (.1) Lus10019881 [exp] 44 / 2e-05 AT2G34480 337 / 4e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10023454 [exp] 44 / 2e-05 AT2G34480 337 / 4e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10023457 [exp] 42 / 7e-05 AT2G34480 337 / 2e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10014035 [exp] 42 / 0.0001 AT2G34480 338 / 2e-117 Ribosomal protein L18ae/LX family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380200 [exp] 56 / 5e-10 AT1G17080 127 / 3e-38 Ribosomal protein L18ae family (.1) Potri.002G057600 [exp] 42 / 5e-05 AT2G34480 342 / 3e-122 Ribosomal protein L18ae/LX family protein (.1) Potri.011G072400 [exp] 41 / 0.0001 AT2G34480 349 / 4e-125 Ribosomal protein L18ae/LX family protein (.1) Potri.004G063400 [exp] 39 / 0.0008 AT2G34480 345 / 1e-123 Ribosomal protein L18ae/LX family protein (.1) Potri.004G063300 [exp] 39 / 0.0008 AT2G34480 345 / 1e-123 Ribosomal protein L18ae/LX family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028130 pacid=23166545 polypeptide=Lus10028130 locus=Lus10028130.g ID=Lus10028130.BGIv1.0 annot-version=v1.0 ATGACCGGAGAAGGAGAAGGCAGGGGCCTCGTTGCCGCCGGCGAAAATCCTGATAAACCATACTACTACGGAACCTTTCAAGGCGTCGCAAATTACTATC AGCCGCCTCCTCCTCCTCCTCCGTCCCTACAACAACTGCAGCCTCCCGCCGGTTTCATTCATCCGGTTGCGCCTCCTCATAATTCTGTTGTCAATCACCC TTATTATCCCCATGGATATCACGCCATTACAACTGGTTATGTGCTTGCGGAAGGAAGGCCTTTGATTAGGGAGCATCCCCTCCCTTGCTGTGGAATGGGC ATGGGATGGTTCTTGTTTATTATCGGCTTCTTTTTTGGTGGCATCCCTTGGTATATTGGAGCATTAGTCCTACTATTCGCACAAGTTGACCACAGAGAGA AACCTGGATATGTTGCGTGTGTTATAGCTTACTACCAGTACCAAGTTGTTGGACTGGCCCTTCCAGCTGAGGGGCATGAGCATCCCAAGATAAATCGGAT GACACGCAGTGGCACAGAAATGAAGCGAGGGGAAAGTCCAAGTTCTGTTAAATCTTGA
AA sequence Show only first row Show all	>Lus10028130 pacid=23166545 polypeptide=Lus10028130 locus=Lus10028130.g ID=Lus10028130.BGIv1.0 annot-version=v1.0 MTGEGEGRGLVAAGENPDKPYYYGTFQGVANYYQPPPPPPPSLQQLQPPAGFIHPVAPPHNSVVNHPYYPHGYHAITTGYVLAEGRPLIREHPLPCCGMG MGWFLFIIGFFFGGIPWYIGALVLLFAQVDHREKPGYVACVIAYYQYQVVGLALPAEGHEHPKINRMTRSGTEMKRGESPSSVKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10028130 [exp]	0	1
AT1G01840			unknown protein		Lus10036553 [exp]	6.6	0.7792
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10020212 [exp]	11.1	0.6701
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	11.2	0.7319
AT5G25280			serine-rich protein-related (....		Lus10008808 [exp]	15.9	0.6894
AT4G35220			Cyclase family protein (.1)		Lus10019822 [exp]	17.3	0.7598
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10029939 [exp]	20.0	0.6953
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	25.3	0.6704
AT1G55000			peptidoglycan-binding LysM dom...		Lus10029925 [exp]	32.9	0.7084
AT5G44980			F-box/RNI-like/FBD-like domain...		Lus10008502 [exp]	33.0	0.6325
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029944 [exp]	33.2	0.6670

Compare expression of checked genes

Lus10028130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.