Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18260 306 / 9e-102 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042834 [exp] 355 / 7e-126 AT4G18260 230 / 2e-73 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G080300 [exp] 332 / 1e-115 AT4G18260 311 / 2e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028131 pacid=23166422 polypeptide=Lus10028131 locus=Lus10028131.g ID=Lus10028131.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGCAAGGGAAGAAACGCCGAGTGGTGGCGGAATCGCTGGGGTGGCTGACGGAATCAACCATTATGCCGAGGAAGCACAGGGCAATCGAAG GAGTCGGCGCCTCTTCTATCGTCGAGCTCAAGGCTCAACTCTATAAATCCCAGGAGGAAGCTAAGAAATCTAAGGAATTGGCTGGTCCCGATGTCCAGTA TCATCGCCCCACGAAGAAAATTAGCCCCCACGATCCTTTCTCCGCCAAGAACTCCGGCGTCGATTCCCGTGCCCACAAGGATAAGCTTGAGCTGAAAGCG GTCAACGATGGATCGGTGAGCTATGCAGCGTTGGAGAAGAAAGCACAGATATATGAGAAGCTTGTAAGAGGAGAGTTATCCGATGAGGAAGCTGAAGAGA AGTATTGTGTTGACTTCTTTCGCAAGGGAATTGAGCATGAGGAGTCTCAGCAGTCTGAAACGTCGGGCACCATGGCAGCATCAAACGTGAAGGATGGAGA TGCTGACAATGATGGTTCTGGTCTATTCAGCACCACGAAATTTGTAAAGCCTGGCCAATCAGGTGGAGCATTTGACAGAGATGAACACAAGCGCTTTGTC AGTCAAGTTCACGAAGAAGCGAATCAAGCAAGAGAAAAGGTGTCGGAGCTGAAAGTACAGAGGCAAGAGCAAGCAGCAGCTCGTAGAGAGAAACTTAAGC AGGATTATTTAAGAAAAAAATTAGAGAAACTGAAAGCTAGGACCTCCGTAGTAGAAGAAGAACAACAACATGCAGAAGGTGGTAGCTGA
AA sequence Show only first row Show all	>Lus10028131 pacid=23166422 polypeptide=Lus10028131 locus=Lus10028131.g ID=Lus10028131.BGIv1.0 annot-version=v1.0 MEEEQGKKRRVVAESLGWLTESTIMPRKHRAIEGVGASSIVELKAQLYKSQEEAKKSKELAGPDVQYHRPTKKISPHDPFSAKNSGVDSRAHKDKLELKA VNDGSVSYAALEKKAQIYEKLVRGELSDEEAEEKYCVDFFRKGIEHEESQQSETSGTMAASNVKDGDADNDGSGLFSTTKFVKPGQSGGAFDRDEHKRFV SQVHEEANQAREKVSELKVQRQEQAAARREKLKQDYLRKKLEKLKARTSVVEEEQQHAEGGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18260			Cytochrome b561/ferric reducta...		Lus10028131 [exp]	0	1
AT1G28410			unknown protein		Lus10015403 [exp]	2.2	0.8853
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	7.9	0.8571
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	11.9	0.8618
AT1G09150			pseudouridine synthase and arc...		Lus10015197 [exp]	16.9	0.8509
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10013228 [exp]	18.7	0.8411
AT1G19600			pfkB-like carbohydrate kinase ...		Lus10024268 [exp]	19.2	0.8370
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10033464 [exp]	24.4	0.8484
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	25.5	0.8552
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036158 [exp]	29.0	0.8186
AT1G20770			unknown protein		Lus10013217 [exp]	29.4	0.8425

Compare expression of checked genes

Lus10028131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.