Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18240 1248 / 0 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 385 / 6e-117 ATSS3 starch synthase 3 (.1.2) AT5G65685 242 / 2e-70 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G01180 203 / 3e-54 ATSS2 starch synthase 2 (.1) AT5G24300 199 / 1e-53 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT1G32900 183 / 2e-48 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042837 [exp] 2028 / 0 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10023319 [exp] 1488 / 0 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 1461 / 0 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10006780 [exp] 367 / 2e-109 AT1G11720 1529 / 0.0 starch synthase 3 (.1.2) Lus10020044 [exp] 343 / 7e-101 AT1G11720 1508 / 0.0 starch synthase 3 (.1.2) Lus10022398 [exp] 225 / 2e-62 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10018116 [exp] 225 / 3e-62 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10033014 [exp] 199 / 7e-53 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 183 / 1e-47 AT3G01180 928 / 0.0 starch synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351800 [exp] 1327 / 0 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 397 / 1e-125 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 381 / 2e-114 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.007G009600 [exp] 304 / 7e-90 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.017G084100 [exp] 207 / 1e-55 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.015G012400 [exp] 205 / 1e-55 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.011G152200 [exp] 168 / 2e-43 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G449500 [exp] 166 / 1e-42 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G079450 [exp] 74 / 6e-16 AT4G18240 77 / 1e-18 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.006G097600 [exp] 44 / 0.0008 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10028133 pacid=23166552 polypeptide=Lus10028133 locus=Lus10028133.g ID=Lus10028133.BGIv1.0 annot-version=v1.0 ATGGCGATTACCACCAAGCAGCCATCATCTTGCTTTATCGGCCAAGCTTTTGCAGGCTTCAGCTACAGTAATTCCAGAAATGTTCGCTTATGGCATCCTC TACATCACCAGATGCTGCTTCCTGCTTCTTGCAAGATGCGCCACCGCAATTTACGCTACAAGAAACGGCAAGTGAATAAAACCTCAACTGAACTGCCTAC GCCGGCAGCAGAATCTCTATCCGACGACGTGAACGAACAGGCTCTGTCGTCGAATCGGGTCCACAATCATCCGAATCACGAAATTGTGCCCTTCGTCGAA GCTACTGCTAGCATCGTTCAGCAGCACAATGCCAGCGTTGAAGATACGGATACCGGGGAGGAGCCTGAGGACCGCGTCAATGGAGAAGAGCCGTTCGATA GTAAAGTAGAGCCGGAGTACTTTCAAGATGTCGATTTTGAATACCTAGATGGGCCTACTGTATCTGAAGAAGCATTATCTCTGGCTTTAGACCCAATTGG AAATGGTGAAAATCGACTTTCAAGTGTTCAGATGGAGGATCTAATAGGAATGACGAGAAGCGCTGAGCAAAATATCTTTCTTCTCAACGATGATGAATTT TCTGCTCTTGAGGATACCGACAGAATTCTATCTGAGAAACAGTCGCTGCAAAGAGAGATTAATGGTCTGGAGACGAGATTGGCTGAAACTAATGCGAGGT TGAAGGTTGCTGCCCAAGAGAAGGTATATGTGGACCTCCTAGGGAACCAGTTACAGAAACTAAGGAATGAATTGACTCACAGGAGTCCTGCTGTAGGAGA TGTTCTTCGTCATCCCGTGAACCCAAACAAAGAAGCTGATATGCTTCAAAACTATGCTATGGAGGCTCTCAGTGAGGATATGGATTCATTGAGGACAGAG AACATGTTTCTAAAACAGGATCTAGAAGCACTTAAAGCACAGCTTACCGCTGTCAAGGACACGGATCTGCGAGTCGTAACACTAGAGAAGGAAAGGTCGA CATTGGAGTCCTCCTTAAAGGACTTGGAGTCCAAAGTGTCAACTTCCCAGGAGGATGTTTCAAAACTGTCAAGCCTAAGAGTTGAGTATGAGGACTTGTC TGGGCGAGTGGAAAGTTTGCAAACTTTACTAAATAAGGCAACCGGGCAGGCAGATCAAGCAATTCTTGTGTTGCAGCAAAATCAAGAGTTACGGAAGAAG GTGGATAAATTGGAAGAATGCTTGGAGGAAGCTAACATCTATAAGCTATCATCTGAAAAACTGCAACAGTACAATGAACTGATGCAGCAAAAGATAAAGC TATTGGAAGATCATCTTATGAGGTCTGATGAGGAGATACATTCGTATGTACAGTTATACCAGGAGTCTGTAGAGGAATTTCAGGATACACTTAATAACTT GATAGAAGAAAGGAAAAAAAGAGCTTTAGACAAACCTGTCGATGATATGCCATGGGAACTTTGGAGCCGTTTATTGCTGAAAGTTGATGGCTGGCTACTG GAGGGAAAAATTTCTACTGATGATGCAAAACTTCTGAGAGACCGGGTGTGGAAGAGAGACAGGAAAATTTATGATGCATACATGCAGTGTAGGAAAAATG ATGAGTTTGATACCATATCCACGTTCTTGAAGCTCATTTCGTCACCTAAAAGTCCAGGGTTGCATGTCATTCATATAGCGGCAGAGATGGCTCCGGTTGC TAAGGTTGGTGGGTTAGGAGATGTTGTCAGTGGTCTTGGTAAAGCACTACAAAAGAGAGGACACCTTGTGGAGATTATTATTCCCAAATACGACTGCATG GAATATGATCGAGTATATGACTTAAAGGCCCTAGATAAGGTTGTAGAGTCTTATTATGATGGAAAATTGTACAGAAACAAGATCTGGGTTGGCATTGTTG AAGGTCTCCCGGTATACTTCATTGAGCCTCATCACCCTGGAAAGTTCTTTTGGCGAGGGCAGTTCTACGGGGAGCAGGATGATTTCAAACGCTTCTCATA TTTCAGCCGCGCAGCACTTGAACTGGTTTTTCAAGCTGGAAAAAGACCTGATATAATTCATTGCCACGATTGGCAGACTGCTTTTGTTGCCCCACTCTAC TGGGACATATATACTCCAAAAGGATTAAATTCAGCTAGAATATGTTTCACGTGCCACAACTTTGAGTATCAAGGAACTGCCCCTGCTTCAGAATTGGCAT CATGCGGTCTTGACGTGCACCAGCTTAATAGACCAGATAGAATGCAGGACAACTTTGCGCGTGATAGGGTGAATTCTGTGAAGGGTGCAGTGGTGTTCTC TAACATTGTGACAACAGTATCACCTACCTATGCTCAAGAAGTTCGGACAGCTGAGGGTGGTAAAGGCCTCCATTCAACTCTCAACTTTCACTCCAAGAAG TTCATTGGAATTCTAAATGGAATTGATGGTGATGTTTGGAATCCTTCATCTGATAGTCTCCTCAGTGTCCAATACAGTGCTAATGATCTTGTGGGGAAAG CAGAAAATAAAGCAGCGCTAAGAAGGCACCTGGGGCTTTCCACGGATAATGTCAGGCAGCCATTGGTAGGCTGCATAACAAGATTGGTGCCACAGAAAGG TGTTCATCTCATTAGACACGCGATATACCGAACATTAGAACTTGGTGGACAGTTCGTGCTGCTTGGTTCAAGCCCAATTTCACATATTCAGCAAGAATTC GAGGGTATTGCAAATCAGTTTCGGAATAATAAAAATGCACGGCTAGTACTGAAGTATGACGAAGCTCTATCCCATTCCATTTATGCAGCATCTGACATGT TCATCATCCCATCAATCTTTGAACCCTGCGGCCTGACACAGATGATAGCGATGCGATATGGTGCAGTACCGATTGTAAGGAAGACTGGTGGACTGAATGA CAGCGTCTTTGATGTCGATGATGAAACCATAGATGTCAAGTTTCGCAATGGATTTACCTTCATGAATCCAACTGAGGATGGATTGAACAGCGCATTGGAG AGAGCTTTCAAACACTATATGAAGGAAGAAGAAGAAGAAGGTTGGGAAGAACTTGTGCGGAAAATCATGAAGATGGATTTCAGTTGGGAAACTTCTGCAG CACAATACGAGGAACTGTACTCAACTTCAGTGGCTACGGCTAAGGCTGCTGTTGAGCTATAG
AA sequence Show only first row Show all	>Lus10028133 pacid=23166552 polypeptide=Lus10028133 locus=Lus10028133.g ID=Lus10028133.BGIv1.0 annot-version=v1.0 MAITTKQPSSCFIGQAFAGFSYSNSRNVRLWHPLHHQMLLPASCKMRHRNLRYKKRQVNKTSTELPTPAAESLSDDVNEQALSSNRVHNHPNHEIVPFVE ATASIVQQHNASVEDTDTGEEPEDRVNGEEPFDSKVEPEYFQDVDFEYLDGPTVSEEALSLALDPIGNGENRLSSVQMEDLIGMTRSAEQNIFLLNDDEF SALEDTDRILSEKQSLQREINGLETRLAETNARLKVAAQEKVYVDLLGNQLQKLRNELTHRSPAVGDVLRHPVNPNKEADMLQNYAMEALSEDMDSLRTE NMFLKQDLEALKAQLTAVKDTDLRVVTLEKERSTLESSLKDLESKVSTSQEDVSKLSSLRVEYEDLSGRVESLQTLLNKATGQADQAILVLQQNQELRKK VDKLEECLEEANIYKLSSEKLQQYNELMQQKIKLLEDHLMRSDEEIHSYVQLYQESVEEFQDTLNNLIEERKKRALDKPVDDMPWELWSRLLLKVDGWLL EGKISTDDAKLLRDRVWKRDRKIYDAYMQCRKNDEFDTISTFLKLISSPKSPGLHVIHIAAEMAPVAKVGGLGDVVSGLGKALQKRGHLVEIIIPKYDCM EYDRVYDLKALDKVVESYYDGKLYRNKIWVGIVEGLPVYFIEPHHPGKFFWRGQFYGEQDDFKRFSYFSRAALELVFQAGKRPDIIHCHDWQTAFVAPLY WDIYTPKGLNSARICFTCHNFEYQGTAPASELASCGLDVHQLNRPDRMQDNFARDRVNSVKGAVVFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKK FIGILNGIDGDVWNPSSDSLLSVQYSANDLVGKAENKAALRRHLGLSTDNVRQPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPISHIQQEF EGIANQFRNNKNARLVLKYDEALSHSIYAASDMFIIPSIFEPCGLTQMIAMRYGAVPIVRKTGGLNDSVFDVDDETIDVKFRNGFTFMNPTEDGLNSALE RAFKHYMKEEEEEGWEELVRKIMKMDFSWETSAAQYEELYSTSVATAKAAVEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10028133 [exp]	0	1
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	3.9	0.9107
AT5G20140			SOUL heme-binding family prote...		Lus10001847 [exp]	5.7	0.8748
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10015207 [exp]	8.8	0.9014
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	12.4	0.8708
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10035823 [exp]	12.7	0.8634
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011081 [exp]	13.0	0.8456
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	16.2	0.8886
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	17.6	0.8742
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003600 [exp]	20.2	0.8606
AT2G30170			Protein phosphatase 2C family ...		Lus10010968 [exp]	21.6	0.8533

Compare expression of checked genes

Lus10028133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.