Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53250 123 / 9e-32 unknown protein AT1G53800 76 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042840 [exp] 579 / 0 AT1G53250 144 / 1e-38 unknown protein Lus10003930 [exp] 73 / 1e-13 AT1G53800 392 / 2e-130 unknown protein Lus10037460 [exp] 72 / 2e-13 AT1G53800 387 / 3e-126 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G393700 [exp] 164 / 1e-46 AT1G53250 124 / 5e-32 unknown protein Potri.011G112300 [exp] 151 / 1e-41 AT1G53250 139 / 2e-37 unknown protein Potri.003G073400 [exp] 75 / 2e-14 AT1G53800 426 / 3e-143 unknown protein Potri.001G161900 [exp] 72 / 2e-13 AT1G53800 433 / 8e-146 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07460 [flax] [poplar] NUMOD3 NUMOD3 motif
Representative CDS sequence Show only first row Show all	>Lus10028136 pacid=23166408 polypeptide=Lus10028136 locus=Lus10028136.g ID=Lus10028136.BGIv1.0 annot-version=v1.0 ATGTCTGTAGCTAATGTACCTGGACATCCTGCTCCATGTACTTTAATGGGCACAGCACTGGATCATATGATGGTGGTGGAATGCACGTTTCCCTCACGCC TCGCTCCTCCAGTGTATCACACATCTTATGCCAGAAGCTTATGTGCCTTGTGTGGCTCCCTTACTTCCCCACGAAGGGCTTCAAGTGTTGGAGTAGCGAG TGCTAGTTTCGATTCTCAACAAACTTTTGATTTTGATAAGTATTTCCTCTCGGAGCTTGGACTATACTCTACAGATGAGCAGTTTACTTATGAGAATGAA GCTGGAAGTGAGGCTGAATTCAGTGAAGTTCGTAACATATTTCATCATAGGGAAAGAAAACCATTCCTTAATCATGGGAATAAGGGACGAGTTCCATGGA ACAAAGGGAGAAAGCATTCTGCTGAGACTCGGGAACTCATCAGGCAGAGAACAATTGAGGCCTTGCGAAGCCCCCAGGTCAGAAAGAAGAGAGAACTGTC AAGTCCTGATAGAAAGCATAGTGAGGAGAACAAGGCCAAGATAAGCGCTTCACTTAGGCGACTCTGGGACAAGCGTTTGAAACGGAAAAAGTTAGCGGAA AAATTCATCCTCCAATGGGCAGAAAACATTGCAAAAGCTGCCAAAAATGGAGGCCTCGATGAACAGATGTTGCATTGGGATAGCTACAGTTTAATGGAAC AAGAAATACATCGTCATCAGCTTCAATTTGCCATGGAGAAAAAGATGGCGAAGCAGCTGGTGATGTCGAAGTTGGCGAGTGCAGCAGAAGGAAAAGCAGA AAAATTGGCTGTTCGCGCTCAAATGAAAAAGAAGAAGGAAGAGAAAGCAAAAACCAGGGTTGAAGAAAAGCGTGAGGATCATAGAAGACCTGTAAAGAAC ACTGAAAAATCATCTGTTAACCGGGACTTGAAAAGAAAGAAGAAATTTGTGAAGATTGGAAGAAAGAAACGAGTAAACCGACAAATGTTTGATAAAGGAG GAGCACAGATTTCCAGTTCTCAAATCTGGGAGAAAATAGATTCCGAGCTGACAGAGCGGGGACCAAAAAGAGATTCACTTGCAGATGAGAGTTTGGAGCA GCAGCTGCAGTTTACTCATTCTTCTTAA
AA sequence Show only first row Show all	>Lus10028136 pacid=23166408 polypeptide=Lus10028136 locus=Lus10028136.g ID=Lus10028136.BGIv1.0 annot-version=v1.0 MSVANVPGHPAPCTLMGTALDHMMVVECTFPSRLAPPVYHTSYARSLCALCGSLTSPRRASSVGVASASFDSQQTFDFDKYFLSELGLYSTDEQFTYENE AGSEAEFSEVRNIFHHRERKPFLNHGNKGRVPWNKGRKHSAETRELIRQRTIEALRSPQVRKKRELSSPDRKHSEENKAKISASLRRLWDKRLKRKKLAE KFILQWAENIAKAAKNGGLDEQMLHWDSYSLMEQEIHRHQLQFAMEKKMAKQLVMSKLASAAEGKAEKLAVRAQMKKKKEEKAKTRVEEKREDHRRPVKN TEKSSVNRDLKRKKKFVKIGRKKRVNRQMFDKGGAQISSSQIWEKIDSELTERGPKRDSLADESLEQQLQFTHSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53250			unknown protein		Lus10028136 [exp]	0	1
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	2.0	0.9373
AT3G10540			3-phosphoinositide-dependent p...		Lus10037921 [exp]	2.2	0.9244
AT5G27290			unknown protein		Lus10018966 [exp]	2.4	0.9411
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	4.9	0.9292
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	5.7	0.9304
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	9.5	0.9154
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	11.3	0.9113
AT5G39980			Tetratricopeptide repeat (TPR)...		Lus10041429 [exp]	12.4	0.8849
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	13.3	0.9078
AT1G60230			Radical SAM superfamily protei...		Lus10029159 [exp]	13.7	0.8974

Compare expression of checked genes

Lus10028136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.