Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59990 82 / 3e-18 CCT motif family protein (.1.2) AT5G41380 74 / 3e-15 CCT motif family protein (.1) AT2G33350 72 / 5e-14 CCT motif family protein (.1.2) AT1G63820 71 / 5e-14 CCT motif family protein (.1) AT1G04500 69 / 4e-13 CCT motif family protein (.1) AT3G12890 64 / 7e-12 ASML2 activator of spomin::LUC2 (.1) AT4G27900 59 / 6e-10 CCT motif family protein (.1.2) AT5G53420 56 / 2e-09 CCT motif family protein (.1.2.3) AT2G24790 55 / 1e-08 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT3G02380 55 / 2e-08 CO ATCOL2, COL2 CONSTANS-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042841 [exp] 238 / 3e-79 AT5G59990 53 / 8e-09 CCT motif family protein (.1.2) Lus10014478 [exp] 74 / 3e-15 AT1G04500 219 / 4e-70 CCT motif family protein (.1) Lus10024655 [exp] 72 / 3e-14 AT1G63820 180 / 2e-54 CCT motif family protein (.1) Lus10032288 [exp] 71 / 7e-14 AT1G63820 160 / 5e-47 CCT motif family protein (.1) Lus10023727 [exp] 71 / 2e-13 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10031192 [exp] 66 / 2e-12 AT3G12890 107 / 2e-27 activator of spomin::LUC2 (.1) Lus10031770 [exp] 66 / 3e-12 AT3G12890 104 / 2e-26 activator of spomin::LUC2 (.1) Lus10027344 [exp] 61 / 2e-10 AT5G53420 209 / 3e-67 CCT motif family protein (.1.2.3) Lus10014919 [exp] 61 / 2e-10 AT5G53420 205 / 3e-65 CCT motif family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233600 [exp] 92 / 3e-22 AT5G59990 125 / 3e-35 CCT motif family protein (.1.2) Potri.003G130500 [exp] 73 / 1e-14 AT5G41380 210 / 8e-66 CCT motif family protein (.1) Potri.001G101200 [exp] 73 / 1e-14 AT5G41380 187 / 4e-57 CCT motif family protein (.1) Potri.008G171500 [exp] 69 / 6e-13 AT1G04500 305 / 8e-101 CCT motif family protein (.1) Potri.010G066100 [exp] 69 / 6e-13 AT1G04500 263 / 3e-84 CCT motif family protein (.1) Potri.005G097700 [exp] 64 / 2e-11 AT3G12890 156 / 2e-46 activator of spomin::LUC2 (.1) Potri.007G066800 [exp] 62 / 4e-11 AT3G12890 120 / 2e-32 activator of spomin::LUC2 (.1) Potri.012G014000 [exp] 62 / 6e-11 AT5G53420 257 / 1e-85 CCT motif family protein (.1.2.3) Potri.015G014000 [exp] 57 / 2e-09 AT5G53420 275 / 1e-92 CCT motif family protein (.1.2.3) Potri.001G136700 [exp] 57 / 2e-09 AT3G12890 85 / 3e-19 activator of spomin::LUC2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10028137 pacid=23166519 polypeptide=Lus10028137 locus=Lus10028137.g ID=Lus10028137.BGIv1.0 annot-version=v1.0 ATGTTGTACGGAAACCCAAACGCAGATTTGTTGATGATGCTGGACACGACGCCGTGTTCATCACTTGCTGCTACTGCTACTGCTGCTCCTGTGATGGAAG TGGGAGCTGGAAGCTGCTGGTTCATGAATCAGCATGGCCTGCAGAGGAGCGTAAGCAGCCATGCTCTGGAGGAGGAGAAGAGTAGCAGCTGCGGTACTAG GACAACAGCATGGACGCCCCCGTATAGCAATAATTATTCTCATGATCAAGAAATGTCAAGTAGTACTGTTAGTAATGTGGATCAACATAATAACAACTAT GGTAGTGTTAGGAGGGTGTTCAGCGCCGGAGACTTGCATCAGCATGAATGTTGGAATGATGGAGAGAAGCTGATGAGGACGATGATGAGGAAGAGAGCAG AAAGCCCGTCAATAATGTCGACGAGCGAGAGCTGCAGCAGCATCATTGAGAGTATGAGCAAAGCATGCAAGTACTCTCCTCTGGAGAAGCAACAACGCAT CCTTAGGTACCGTACCAAGAGGAACCTACGCAACTTCACCAAGAAGATCAAGTCTGGAATGCAGTATGAGTGTAGGAAGACACTGGCAGATAGCAGGCCA AGAATCAGAGGAAGGTTTGCCAGGAATGATAATGATCATGAGATTACTACTACTGACCATGATCATTTTCATACCAACACCAACCCCAGCTGGAACACAA CTGTCAACAACGACAGCTATAGTACTACTGGACGACAAGACCATCATCAACAATATGATCATGACGACGATTACGACGATGAAGATGAGAATTACTGGGT CAATTTCCTCAACGCTTCCAGTTCATCCGGCTACCCTTAA
AA sequence Show only first row Show all	>Lus10028137 pacid=23166519 polypeptide=Lus10028137 locus=Lus10028137.g ID=Lus10028137.BGIv1.0 annot-version=v1.0 MLYGNPNADLLMMLDTTPCSSLAATATAAPVMEVGAGSCWFMNQHGLQRSVSSHALEEEKSSSCGTRTTAWTPPYSNNYSHDQEMSSSTVSNVDQHNNNY GSVRRVFSAGDLHQHECWNDGEKLMRTMMRKRAESPSIMSTSESCSSIIESMSKACKYSPLEKQQRILRYRTKRNLRNFTKKIKSGMQYECRKTLADSRP RIRGRFARNDNDHEITTTDHDHFHTNTNPSWNTTVNNDSYSTTGRQDHHQQYDHDDDYDDEDENYWVNFLNASSSSGYP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59990			CCT motif family protein (.1.2...		Lus10028137 [exp]	0	1
AT5G59990			CCT motif family protein (.1.2...		Lus10042841 [exp]	1.0	0.9532
AT1G22060			unknown protein		Lus10037927 [exp]	5.1	0.8891
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10039609 [exp]	6.0	0.8434
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	6.9	0.8644
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	7.7	0.8879
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	9.9	0.8472
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018889 [exp]	10.0	0.8794
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	13.8	0.8684
					Lus10036790 [exp]	14.1	0.8471
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	16.2	0.8467

Compare expression of checked genes

Lus10028137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.