Plant FIBer expression Database

Lus10028138 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59980 407 / 2e-134 Polymerase/histidinol phosphatase-like (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042842
[exp]
605 / 0 AT5G59980 217 / 4e-65 Polymerase/histidinol phosphatase-like (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G025800
[exp]
495 / 7e-167 AT5G59980 419 / 1e-138 Polymerase/histidinol phosphatase-like (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0034 Amidohydrolase PF01876 RNase_P_p30 RNase P subunit p30
Representative CDS sequence
>Lus10028138 pacid=23166425 polypeptide=Lus10028138 locus=Lus10028138.g ID=Lus10028138.BGIv1.0 annot-version=v1.0
ATGGGGTTCTTCGACCTTAACATACCGTACGAGGCTTCCCAATCCTCTAAGGCTACTCGAATGAAGCTTGTAATCAAGGCGATGGAGTTAGGCTACAGCG
GCGTTGCTTACAATCGGACGATGAGGGGCGTGATGTCCGATCATGACCGTTGCTCGATTCCGTTCTTGTCCTTCTCATCTCTCCTCAATGTCGTTCCTTC
TCTCGCGTCATCCGTTACTTTCCACCGCGAGCTCCTCGGAGTGCCTCGCGATTCGCCCTTCCGCCAGTACACCCGTTTGACCGTCTGCGTGAATAGTCAG
GCACAAGCTCAGGTGCTCAACAGCGGGAATCCTATCTTGAAGAGCTATGATATTGTGGCGGTCAAGCCTACTAATCAGATTGTCTTCGACCATGCTTGTT
TGAAATCAGAGGTGGACATAATTGCTATTGATTTCACAGAGAAGCTGCCATTCAGGTTGAAGATGTCAATGGTTAAAGCAGCGGTTGAGCGTGGAGTTTA
TTTTGAGATTGCTTACTCTGATCTTATTGCGGATGTTCAAGCGAGAAAGCAAATGATCCCTAATGCTAAGTTGAGGTTCATCGTCCTGAATTTTCAGTTG
TTAGTTGATTGGACGCGAGGCAAGAATCTGATTCTTTCCAGTGCTGCTTCATCGGTGACTGGACTTAGGGGGCCTTATGATGTTGCAAACTTATTAGCTT
CATTACTTGGCCTCACTATGGAACGAGCCAAAGCAGCCATCTCCAAAAATTGTAGAAACCTTCTAACTAATTCTGTAAGGAAAAAGAACTTCTACAAAGA
GGCTATAAGGGTTGAACCGTTATCAAGTTTGCAAGCAAGTGACCCGAAGAATGCCTTAATGGACTCGTTTAAGTGGGATCCCATCTCTAGTGGTGAAGGG
GATCTACAATTAGATGATGTGGCAAAGTCATTTTCTGCCACTGCAGCAATCAACTTAGATTCAATTATTGATGGTGTCCCTGCACTTGGTGGAAGCTTTA
AGCTGGCTTTGGAGCCCATTGAGTCACTTCCCTCTACTACAGGAGTGGTTGAGATGCTTGATGGAGATAAACTTGATCCTTGGAATAGTCAGGTTTCTGT
AGACAATGCACCATATGAGAAGCAAATCTCTGGTTCTGAAGATTCTGACAAATTCAGTGTACCAGATTCTAATGCAACAGTTATACCTGGTTTCGAGGAG
ATTAGGTCACCAACTACAACAAACAGCGAAGGACCTGTAATCTTGGATGGCTCTGTGGATTCCCTTTATTTTTCTGAAACTGAAAAATACATATCTTTAT
CTGTACCAGATCATCAAGATGATTGTATGGTCTATAACACGACTGCCACTGACAGCCAGTCTATTGCTGTATGCACTGTGGATGCTAAAACAGATGTGTC
GGAGGGTGCAGACTTTATTCCTCCATTTGACGAGAATTTGCAAAGTCCGGACATCAAATTGGATGCAGCAGTTGGTGAATTCAAGGAGGTAATCTTAAAA
CACCAAAACCATCCACAGGCTTGCACAAATGCTTCTGGTCATGAACCGTTGCAGTCGGTAAATATTTCAGGATTAGTTGCAGATAAGGATTCACTCCCTG
TCTCTTCCAGTGTCGTGGCAATGGATGCTTCACCAACTGTAAATTATAGGTTAATAGAAGACATTGAAACAAACGAGCTGGTGCAAACAGAAAGCAATGC
AGATATTTCAGATGATAAATTTTATGTTAAAGATGGCTCTCCAGTTGCATGTTCTGTGGACTTCAAGGGACAGAGTTCTGAAGAACAACATCATGTTGGC
TCTAGCAGCACTAACCATACTCCAGTTACATCTTTCCCAGGTTGTTTGATTCAGGAAATAGGAACAGTAGAAGCCATTAGATCCTGTAGAGCTTTAACCA
TCATGAAACTGATTATTCGTAGTGGATTTTTTGTCCTTGGATGGAGCGGAGGAGGACATAGGACAGCCCCCATTGATGAAATAGTGATTTTCTGA
AA sequence
>Lus10028138 pacid=23166425 polypeptide=Lus10028138 locus=Lus10028138.g ID=Lus10028138.BGIv1.0 annot-version=v1.0
MGFFDLNIPYEASQSSKATRMKLVIKAMELGYSGVAYNRTMRGVMSDHDRCSIPFLSFSSLLNVVPSLASSVTFHRELLGVPRDSPFRQYTRLTVCVNSQ
AQAQVLNSGNPILKSYDIVAVKPTNQIVFDHACLKSEVDIIAIDFTEKLPFRLKMSMVKAAVERGVYFEIAYSDLIADVQARKQMIPNAKLRFIVLNFQL
LVDWTRGKNLILSSAASSVTGLRGPYDVANLLASLLGLTMERAKAAISKNCRNLLTNSVRKKNFYKEAIRVEPLSSLQASDPKNALMDSFKWDPISSGEG
DLQLDDVAKSFSATAAINLDSIIDGVPALGGSFKLALEPIESLPSTTGVVEMLDGDKLDPWNSQVSVDNAPYEKQISGSEDSDKFSVPDSNATVIPGFEE
IRSPTTTNSEGPVILDGSVDSLYFSETEKYISLSVPDHQDDCMVYNTTATDSQSIAVCTVDAKTDVSEGADFIPPFDENLQSPDIKLDAAVGEFKEVILK
HQNHPQACTNASGHEPLQSVNISGLVADKDSLPVSSSVVAMDASPTVNYRLIEDIETNELVQTESNADISDDKFYVKDGSPVACSVDFKGQSSEEQHHVG
SSSTNHTPVTSFPGCLIQEIGTVEAIRSCRALTIMKLIIRSGFFVLGWSGGGHRTAPIDEIVIF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G59980 Polymerase/histidinol phosphat... Lus10028138
[exp]
0 1
AT5G48120 ARM repeat superfamily protein... Lus10011436
[exp]
5.7 0.9133
AT3G26540 Tetratricopeptide repeat (TPR)... Lus10015584
[exp]
5.9 0.9118
AT1G63130 Tetratricopeptide repeat (TPR)... Lus10029737
[exp]
6.9 0.9072
AT3G06530 ARM repeat superfamily protein... Lus10008676
[exp]
7.1 0.9281
AT4G17610 tRNA/rRNA methyltransferase (S... Lus10011019
[exp]
10.1 0.9086
AT1G26170 ARM repeat superfamily protein... Lus10031911
[exp]
10.8 0.9186
AT3G55160 unknown protein Lus10007252
[exp]
13.1 0.9124
AT4G28200 unknown protein Lus10004616
[exp]
14.0 0.9028
AT2G41620 Nucleoporin interacting compon... Lus10039624
[exp]
20.0 0.9075
AT3G16010 Pentatricopeptide repeat (PPR-... Lus10011464
[exp]
20.0 0.8864

Lus10028138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.