Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07670 1789 / 0 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 1785 / 0 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT4G00900 1378 / 0 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT1G10130 821 / 0 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT3G57330 342 / 5e-101 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT1G27770 341 / 7e-101 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT5G57110 338 / 3e-99 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT2G22950 335 / 7e-99 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT4G29900 337 / 8e-99 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT2G41560 332 / 1e-97 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042843 [exp] 2137 / 0 AT1G07670 1799 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10023328 [exp] 1690 / 0 AT1G07670 1549 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10038484 [exp] 926 / 0 AT1G07670 816 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10007734 [exp] 820 / 0 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018668 [exp] 751 / 0 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10016366 [exp] 343 / 2e-101 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10001638 [exp] 342 / 1e-100 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10001428 [exp] 342 / 1e-100 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10018687 [exp] 335 / 1e-98 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233400 [exp] 1840 / 0 AT1G07670 1800 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.009G025700 [exp] 1827 / 0 AT1G07670 1743 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.014G101900 [exp] 1368 / 0 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.002G117400 [exp] 794 / 0 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.014G014700 [exp] 794 / 0 AT1G10130 1659 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.006G072900 [exp] 366 / 2e-109 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.008G159100 [exp] 358 / 4e-107 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G020600 [exp] 352 / 9e-105 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.003G204000 [exp] 352 / 1e-104 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.018G139800 [exp] 345 / 1e-101 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10028139 pacid=23166501 polypeptide=Lus10028139 locus=Lus10028139.g ID=Lus10028139.BGIv1.0 annot-version=v1.0 ATGGGGAAGGGAGGGCAAGATTTCGGTAAGAGTAGTGAAAAGCCAGGACTTGAATCAGATAATAACGATGTCTTCCCTGCATGGTCGAAAGACGTGAAGG AATGCGAGTCGAATTACCAAGTCGACAGTCATTACGGCCTTTCGGCTGGAGAAGTCGAGAAGAGGCTCCAGATCCATGGCTACAACGAGTTGGAGAAGCA CCCAGGGACCTCAATTTGGGAGTTGATAATAGAGCAATTCAAAGACACTTTAGTTAGGATATTGCTAGCCGCTGCCGTCATATCTTTTGTTTTGGCGTGG TATGATGGTCAGGAAGGTGGCGAGATGGAGATCACGGCTTTTGTCGAGCCTTTGGTGATTTTCTTGATATTGATTGTGAATGCGATTGTCGGGATTTGGC AAGAGAGCAATGCCGAGAAGGCACTTGAAGCTTTGAAGGAAATCCAATCCGAGCATGCTAGTGTCATAAGAGAAGGGAAAAAGATATCTAGTCTCCCTGC AAAGGAACTTGTTCCTGGGGATATAGTGGAGTTGAGGGTAGGTGATAAGGTACCTGCGGATATGCGGCTTTTGAGTTTGGTCAGCTCCACCGTAAGGGTT GAGCAAGGTTCTCTGACGGGAGAGAGTGAAGCTGTGAGCAAGACTGTAAAGCCTGTTTCCGAGAATACAGACATTCAGGGTAAAAAATGTATGGTTTTTG CCGGAACGACAGTCGTGAATGGTAATTGCATGTGCTTGGTCACTGGAACTGGAATGCACACTGAGATAGGGAAGGTTCATTCACAAATTCATGAAGCTTC CCAGCATGAGGAAGATACTCCTTTGAAGAAGAAGTTGAACGAGTTTGGAGAGGCACTAACCTTGATTATTGGAGTTATTTGTGGGCTAGTTTGGCTCATT AATGTCAAGTATTTCCTTACTTGGGAATATGTCGACGGCTGGCCCAAGAACTTCAAGTTCTCATTTGAGAAGTGCACCTATTATTTTGAGATTGCTGTGG CGTTGGCAGTGGCTGCAATACCTGAAGGATTGCCAGCTGTCATAACAACATGTTTGGCACTAGGAACTCGCAAAATGGCTCAAAAGAATGCACTTGTGAG GAAGCTGCCCAGTGTTGAGACTCTTGGTTGCACCACTGTCATCTGCTCTGATAAAACAGGTACTCTGACGACCAATCAGATGGCTGTATCAAAACTTGTA GCTATGGGTTCCAGGACTGGAAATCTAAGATCATTCAATGTGGAAGGCACCACCTATAATCCATTTGATGGCAAAATTGAAGATTGGCCTGTTGGTCGCA TGGATTCTAATCTTCAGATGATCGCTAAGGTTGCTGCAATATGTAATGATGCTGGTGTGGAGCAATCGGGACAGCAGTATATTTCTACCGGCATGCCTAC AGAAGCTGCGTTGAAGGTTTTGGTTGAGAAAATGGGGTTTCCAGGAGGAGTTGATAATGAATCAATCAGTAATGATATTCTTTGTTGCTCTAGCCTATGG AAAAAACTGGAGCAGCGAATCGCTACTCTTGAATTTGACCGTGACAGAAAATCAATGGGTGTCATTGTCAATTCTAGCTCTGGTAGAAAAATGCTGTTAG TGAAGGGTGCTGTAGAGAACGTGCTGGAGAGAAGTACACACGTTCAGTTGCTTGATGGATCTACAGTAGAACTTGACCAATATTCAAGGGATCATATTTT ACAGAGCCTTCATGACATGTCTACAACTGCTTTACGTTGCCTAGGATTTGCATACAAAGAGGATATTCCTGAATTTGACACTTACAATGGTGATGAAGAC CATCCAGCTCACCAGCTGTTACTTAATCCTTCTAATTATTCTCTTATCGAGAGTAAGCTTGTCTTTGTTGGTTTGGTTGGCCTGAGGGACCCACCTCGGA AAGAGGTTCCTCAAGCAATCGAGGACTGCAGGGCTGCTGGAATCAGAGTTATGGTTATTACCGGCGATAACAAAAATACTGCAGAGGCTATTTGTCATGA AATAGGTGTCTTTGGACAGTATGATGACATCAGTTCTAGAAGCTTTACTGGAAGAGACTTCATGGATCATCCTAACAAAAAGGATGTCTTGAGACAAAGT GGAGGGCTGTTATTCTCTAGAGCAGAACCAAGGCACAAACAAGAAATAGTGAGGTTGCTAAAACAGGAAGGAGAGGTTGTTGCAATGACTGGAGATGGTG TAAATGATGCACCTGCTTTGAAGTTGGCTGACATTGGAATAGCAATGGGCATTGCTGGAACGGAGGTCGCAAAAGAAGCATCCGATATGGTGTTGGCGGA TGACAATTTCAGTACCATTGTTGCCGCAGTTGGTGAAGGCAGGTCCATCTACAATAACATGAAGGCATTTATAAGGTACATGATATCATCAAACATTGGT GAGGTTGCTTCCATATTTTTAACTGCAGCTCTGGGTATTCCAGAGGGGATGATCCCCGTCCAACTTTTATGGGTTAATCTAGTAACGGATGGGCCTCCAG CGACTGCTTTAGGGTTCAACCCTCCGGACAAAGATATAATGAAGAAACCTCCCAGAAGAAGCGACGACTCACTGATCTCGGCCTGGATATTATTTCGCTA CCTGGTAATCGGTCTCTATGTCGGAATTGCGACTGTAGGAGTATTCATAATATGGTACACGCACAACTCATTCATGGGGATTGACCTGAGCGGAGACGGC CACAGCCTTGTTAGTTACTCCCAGCTTGCCAGCTGGGATCAATGCGAGTCTTGGAACAACTTCTCGGTCACGCCATTTACTGCAGGAGCACAGACATTTA AGTTCGATTCAAATCCATGCGACTATTTCCGGTCCGGCAAGATCAAGGCCTCCACGTTGTCCCTCTCTGTGCTGGTGGCTATCGAGATGTTCAACTCGTT AAACGCTCTGTCTGAGGATGGAAGCCTTCTAACAATGCCTCCATGGGTGAATCCATTCCTCCTCGTGGCGATGTCAGTATCGTTCGGGTTGCACTTCCTG ATCCTATATGTGCCTTTCCTCGCCCAGATCTTTGGAATCGTGCCTCTCAGCCTGAACGAATGGCTGTTGGTGGTGGCCGTTGCATTTCCCGTCATTCTGA TCGATGAAGTTCTTAAGTTCATCGGGAGGTGTACAAGTTCGTCACGCCATTCTCGTTCGAAGCAGAAATCGGAATGA
AA sequence Show only first row Show all	>Lus10028139 pacid=23166501 polypeptide=Lus10028139 locus=Lus10028139.g ID=Lus10028139.BGIv1.0 annot-version=v1.0 MGKGGQDFGKSSEKPGLESDNNDVFPAWSKDVKECESNYQVDSHYGLSAGEVEKRLQIHGYNELEKHPGTSIWELIIEQFKDTLVRILLAAAVISFVLAW YDGQEGGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALKEIQSEHASVIREGKKISSLPAKELVPGDIVELRVGDKVPADMRLLSLVSSTVRV EQGSLTGESEAVSKTVKPVSENTDIQGKKCMVFAGTTVVNGNCMCLVTGTGMHTEIGKVHSQIHEASQHEEDTPLKKKLNEFGEALTLIIGVICGLVWLI NVKYFLTWEYVDGWPKNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLV AMGSRTGNLRSFNVEGTTYNPFDGKIEDWPVGRMDSNLQMIAKVAAICNDAGVEQSGQQYISTGMPTEAALKVLVEKMGFPGGVDNESISNDILCCSSLW KKLEQRIATLEFDRDRKSMGVIVNSSSGRKMLLVKGAVENVLERSTHVQLLDGSTVELDQYSRDHILQSLHDMSTTALRCLGFAYKEDIPEFDTYNGDED HPAHQLLLNPSNYSLIESKLVFVGLVGLRDPPRKEVPQAIEDCRAAGIRVMVITGDNKNTAEAICHEIGVFGQYDDISSRSFTGRDFMDHPNKKDVLRQS GGLLFSRAEPRHKQEIVRLLKQEGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIG EVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHNSFMGIDLSGDG HSLVSYSQLASWDQCESWNNFSVTPFTAGAQTFKFDSNPCDYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPFLLVAMSVSFGLHFL ILYVPFLAQIFGIVPLSLNEWLLVVAVAFPVILIDEVLKFIGRCTSSSRHSRSKQKSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10028139 [exp]	0	1
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	2.8	0.8109
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	6.3	0.8219
AT5G40740			unknown protein		Lus10014617 [exp]	11.4	0.7659
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10009218 [exp]	17.2	0.7960
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	21.4	0.7872
AT5G05450			P-loop containing nucleoside t...		Lus10009838 [exp]	23.1	0.6677
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	24.4	0.7801
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	25.2	0.8079
AT2G35920			RNA helicase family protein (....		Lus10009660 [exp]	26.2	0.7693
AT3G15180			ARM repeat superfamily protein...		Lus10027294 [exp]	36.9	0.7015

Compare expression of checked genes

Lus10028139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.