Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46290 996 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 954 / 0 Protein kinase superfamily protein (.1) AT5G54380 811 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT5G61350 727 / 0 Protein kinase superfamily protein (.1) AT5G24010 710 / 0 Protein kinase superfamily protein (.1) AT4G39110 710 / 0 Malectin/receptor-like protein kinase family protein (.1) AT2G39360 700 / 0 Protein kinase superfamily protein (.1) AT2G21480 699 / 0 Malectin/receptor-like protein kinase family protein (.1) AT1G30570 667 / 0 HERK2 hercules receptor kinase 2 (.1) AT3G51550 655 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042844 [exp] 1604 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 804 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10027509 [exp] 707 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10003312 [exp] 705 / 0 AT3G46290 741 / 0.0 hercules receptor kinase 1 (.1) Lus10039274 [exp] 703 / 0 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10017478 [exp] 684 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 682 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10021632 [exp] 662 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10000562 [exp] 654 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234200 [exp] 1113 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 1108 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.010G213200 [exp] 825 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.001G405500 [exp] 817 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 805 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.017G143049 [exp] 719 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.004G079700 [exp] 710 / 0 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.009G120400 [exp] 707 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 704 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.011G164700 [exp] 651 / 0 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10028140 pacid=23166450 polypeptide=Lus10028140 locus=Lus10028140.g ID=Lus10028140.BGIv1.0 annot-version=v1.0 ATGTCTGGTAAAGTTCCGATCTTGGTTTTGACCATCTTTACCTTAGCGGTTCTATGTTCCTCAAAGGGGTTTGTCCCTGCTGACAATTACCTTGTAGACT GCGGATCCGATTCAGACACCAAAGTAGGCAACCGTGTCTTTGTTTCCGACAGATCTGATTCAAATCTACTCTCAACCCCTAATCATATCCTTGCCACTAC CTCCAACAAAGCCACCCCTTCAGATGATTCGCTTCTCTACCAAACTGCAAGAATCTTTGATCAGCTTTCCACCTACAAATTCTCAATCAAACAACAAGGC AGGCATTTCATCCGCCTCTACTTCTATCCATTTGCTTACCAAACTTACAACATGAGTCAAGCCAGCTTTGATGTCTCCACTCCAGACCATGGCCTTCTCA GCAGATTCACAGCAACAGGAGGTTCTACTACCATCAAGGAGTTCTCTTTGAATGTAGCATCCGATAGTCTCTCCGTTACTTTTGTTCCCAACTCGAATTC GTTCGCATATGTCAACGCGATTGAAGTTGTTTCGGTCCCTGATAAGCTTATCGAAGAAGGGGCCAACACTTACAATCCAAGGGCAGATTTCCAAGGAGTA GTGCAGCAAGCTCTTGAAACTAGTTACAGAGTGAACATGGGCGGTTCATCGCTCAACTATGTGAACGATACATTGTGGCGAACTTGGGTTGAGGACACGA GCTTTCTCCTTGGAGAAAGCTCTCGTCAAACGGTCAACAATATCGCTGCTGTGGTTTACGTAACGGATGGTTCCACGGAGGAGGTTGCTCCGAAGAGTGT ATACGGTACAGCTTCTGAGATGGCCTCCGCAGGTACTACTAGTAACAACTTCAATGTCACTTGGCAGTTTGAGGTGGATCGTGGATTTCGATATCTCGTT CGGTTCCATTTCTGCGATATTAGGGTGAATGGCACTCTGAACCAGCTTGTGTTTGATGTTTATATAAATTCCTTGTTGGCTATCAAGGATTTCGACATCA CTACGCTCTCAACTAACACGCTTGGTGCTGCTTATTATCGAGATGTTGTCACGCCGGTGATTTCTGATAGTAGTACGCTACGTGTGAGTATCGGTCCGAG TAATTTGGCTTCTACTCCTGATGCACTTCTGAATGGGTTAGAGATCATGAAGATGAACAACTCTATGGGGAGTCTGAGTGGCTCTGCTGCAGTAGTTCCG CGAGCCGGTTCGAAGAAGAAACTCGGGTTGATTGTAGGAGTTGGAGTTGGACTTCCTTTACTGCTATTAGCTGGATGTATTTTTCTGGTGTTTAGAAGAA GAAAACAGCAGGCGGCACAAGGGCATTCGAAAACTTGGATCCCCTTATCGATCGGGGGAGGACATTCTCACACTACAGGAAGTAAATTCTCGAACGGAAC GGCTGCTAGCATTGATTTGAATCTGCAGTACCGCATTCCGTTTGCAGCTCTTCAAGAGGCCACAAATAATTTCGACGAAAGTTGGGTTATTGGGATCGGC GGGTTTGGGAAAGTGTATAAAGGAGAGTTGAATGATGGTCCTAAAGTAGCTGTGAAACGAGGTAATCCTCGCTCGCAACAAGGACTAGCGGAGTTCCAGA CCGAGATCGAGATGCTTTCTCAGTTCCGTCACCGCCATCTTGTTTCGCTCATTGGTTATTGCGACGAAAAGAACGAGATGATCTTGGTGTACGAGTACAT GGAGAACGGTACTCTCAAGAGCCACCTCTACGGATCGGAGCATCCTAGCTTGGGATGGAAGCAACGTCTCGAGGCGTGCATAGGAGCAGCAAGAGGGCTT CATTACCTTCATACCGGTTACGCGAAAGCAGTTATTCACCGCGATGTCAAGTCCGCAAACATCTTGCTGGACGAGAATCTCATGGCGAAAGTGGCCGATT TCGGCCTCTCCAAGACCGGACCGGAGATCGATCAAACACACGTTAGCACTGCGGTGAAAGGTAGTTTCGGATATCTGGATCCCGAATACTTTAGAAGGCA ACAGTTGACCGACAAATCGGATGTGTATTCGTTCGGAGTGGTGTTGTTCGAGGTTTTATGTGCGAGGCCTGTTATAGACCCGACTCTTCCGAGGGAAATG GTGAACTTGGCGGAATGGGCAATGAAGTGGCAGAAGAAGGGACAGCTCGAGCAGATAATCGATTCGTCGCTTGCGGGGAAGATCAGACCGGATTCACTGC GTAAGTTTGGAGAGACGGCCGAGAAATGCTTGGCTGAGTATGGTGTGGACAGGCCTTCCATGGGGGATGTGTTGTGGAACTTGGAGTATGCTCTTCAACT CCAGGAGGCGATTGTTCCCGATGAAGACAACAGCACCAACATGATCGGGGACCTTTCTCCGCAAGTCGACAATTTCAGCCAAGTCGATAACAGTGCGCCG TTCGGTGGAGTGTCGCATCCTGATGACATCTCGAATGCTTCGATGAGTAAGGTGTTCTCGCAGCTGGTGAAGTCCGAGGGCAGGTAG
AA sequence Show only first row Show all	>Lus10028140 pacid=23166450 polypeptide=Lus10028140 locus=Lus10028140.g ID=Lus10028140.BGIv1.0 annot-version=v1.0 MSGKVPILVLTIFTLAVLCSSKGFVPADNYLVDCGSDSDTKVGNRVFVSDRSDSNLLSTPNHILATTSNKATPSDDSLLYQTARIFDQLSTYKFSIKQQG RHFIRLYFYPFAYQTYNMSQASFDVSTPDHGLLSRFTATGGSTTIKEFSLNVASDSLSVTFVPNSNSFAYVNAIEVVSVPDKLIEEGANTYNPRADFQGV VQQALETSYRVNMGGSSLNYVNDTLWRTWVEDTSFLLGESSRQTVNNIAAVVYVTDGSTEEVAPKSVYGTASEMASAGTTSNNFNVTWQFEVDRGFRYLV RFHFCDIRVNGTLNQLVFDVYINSLLAIKDFDITTLSTNTLGAAYYRDVVTPVISDSSTLRVSIGPSNLASTPDALLNGLEIMKMNNSMGSLSGSAAVVP RAGSKKKLGLIVGVGVGLPLLLLAGCIFLVFRRRKQQAAQGHSKTWIPLSIGGGHSHTTGSKFSNGTAASIDLNLQYRIPFAALQEATNNFDESWVIGIG GFGKVYKGELNDGPKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILVYEYMENGTLKSHLYGSEHPSLGWKQRLEACIGAARGL HYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVIDPTLPREM VNLAEWAMKWQKKGQLEQIIDSSLAGKIRPDSLRKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAIVPDEDNSTNMIGDLSPQVDNFSQVDNSAP FGGVSHPDDISNASMSKVFSQLVKSEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10028140 [exp]	0	1
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10042844 [exp]	1.4	0.8971
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014573 [exp]	3.5	0.8289
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001385 [exp]	6.9	0.8494
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10014433 [exp]	9.9	0.8001
AT2G34250			SecY protein transport family ...		Lus10029262 [exp]	10.2	0.8134
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10031436 [exp]	11.2	0.7868
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	14.2	0.8482
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Lus10006632 [exp]	15.2	0.7781
AT5G52180			unknown protein		Lus10015101 [exp]	18.8	0.8221
AT3G18060			transducin family protein / WD...		Lus10038960 [exp]	19.5	0.8063

Compare expression of checked genes

Lus10028140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.