Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73140 561 / 0 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01360 363 / 7e-123 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G55990 353 / 3e-118 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 345 / 8e-116 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 337 / 2e-112 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G38320 328 / 2e-109 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT3G11030 327 / 2e-108 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT2G40320 325 / 8e-108 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT5G01620 324 / 3e-107 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT5G20590 242 / 4e-75 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042845 [exp] 816 / 0 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 365 / 1e-123 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 357 / 2e-120 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028974 [exp] 351 / 1e-117 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007497 [exp] 347 / 4e-116 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 335 / 3e-111 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10040953 [exp] 325 / 1e-107 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10022676 [exp] 322 / 7e-107 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10009839 [exp] 322 / 1e-106 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G376700 [exp] 567 / 0 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 361 / 6e-122 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.010G187500 [exp] 345 / 9e-116 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G073300 [exp] 343 / 3e-115 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.008G069900 [exp] 342 / 1e-113 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187600 [exp] 339 / 1e-112 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G125600 [exp] 337 / 3e-112 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.008G070000 [exp] 335 / 1e-111 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G184000 [exp] 334 / 2e-111 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187300 [exp] 310 / 1e-101 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10028141 pacid=23166574 polypeptide=Lus10028141 locus=Lus10028141.g ID=Lus10028141.BGIv1.0 annot-version=v1.0 ATGATCCAAACATTACTACATCAACATGCCGGCCGACTCCCCAACGTTCAATTCATCACAGTCCTCGCCCTCGCCGCCACCCTCGTACTTGGAACCGCCC GCGTAGCATTCGACATCTCCAAGACCGCCAACAGCTACATCTTCACTGCTCTCTACAAAACCACCAATCCACCGCCGGTGGTGTTCGTTTCTCCCGAGGA TCGCCGGTCGTTCCGGCCGGAGACGTGCAACGTGTTCGAAGGAGAATGGGTGTGGGACAACGTGACGTACCCACTGTACAGGGAGGACAGCTGTCCTTAC CTTGTGAAGCAGACCACCTGCGGACGAAACGGGCGTCCCGACGATTCGTACCGGAACTGGAGGTGGCAGCCCGGCGGCGGGGGAGGTTGCGCCGCCTTGC CGGATTTTGATGCGGCGAAGTTGTTGGATGTTTTGAGAGGGAAGAGGGTGATGTTTGTTGGGGATTCGGTGCAGAGGAGTCAGTTTGAGTCTATGGTTTG TATGATTCAATCGGTTATTCCGGCTAGCGAGAAATCTTTTGAGAGGGTTCCGCCGATGAAGATCTTCAAAGCACTGGAATGGAACGTGACGATCGAGTAC TATTGGGCACCTTTCATCGTGGAATCAATCTCAGACCATGCCACCAACCACACTGTACACAAACGACTGGTGAATCTGGACGCCATCTCCAAGCATGGCA GCACCTGGAAACTAGCTGATGTTCTTGTTTTCGAAAGCTACGTTTGGTGGATGCACAAGCCTTCCATTAATGCCACTTACGGATCAACTGAGCACATTCA GGAATATGAAGTGGCAGAAGCATACAAGCTAGCAATGGAAACGTGGGCAAATTGGGTGAAAAGTCACATTAACCCTCTCAAGCAGTCCGTCTTCTTCATG AGCATGTCACCGACACATCTATGGAATTGGGAATGGGGAGCCGGAAACGATGGCAACTGCTTCAACGAAACATACCCGATCCACCCCGGCCGATCGTATT GGGGAACCGGCTCGAATACTCGAATAATGAAAATCCTCGGAGATATCATGCGGGAACTCGAACCAGTTGTAAACGTGACGTTTCTGAATATAACTCAGTT GTCCGAGTACAGAAAAGACGGGCACACCGGGATATACGGAGAGCGTAAAGGTAAGCTCCTCACGAAAGAAGAGAGATCTGACCCAAAACATTTTGCTGAC TGTATTCACTGGTGCTTGCCTGGAGTTCCCGACACATGGAACCATATTTTGTATGCCTATTTGTTGCATAATCATCGTAACTAA
AA sequence Show only first row Show all	>Lus10028141 pacid=23166574 polypeptide=Lus10028141 locus=Lus10028141.g ID=Lus10028141.BGIv1.0 annot-version=v1.0 MIQTLLHQHAGRLPNVQFITVLALAATLVLGTARVAFDISKTANSYIFTALYKTTNPPPVVFVSPEDRRSFRPETCNVFEGEWVWDNVTYPLYREDSCPY LVKQTTCGRNGRPDDSYRNWRWQPGGGGGCAALPDFDAAKLLDVLRGKRVMFVGDSVQRSQFESMVCMIQSVIPASEKSFERVPPMKIFKALEWNVTIEY YWAPFIVESISDHATNHTVHKRLVNLDAISKHGSTWKLADVLVFESYVWWMHKPSINATYGSTEHIQEYEVAEAYKLAMETWANWVKSHINPLKQSVFFM SMSPTHLWNWEWGAGNDGNCFNETYPIHPGRSYWGTGSNTRIMKILGDIMRELEPVVNVTFLNITQLSEYRKDGHTGIYGERKGKLLTKEERSDPKHFAD CIHWCLPGVPDTWNHILYAYLLHNHRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10028141 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	3.9	0.9334
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	4.9	0.8953
AT3G06100		NIP7;1, NLM8, N...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10041222 [exp]	5.1	0.8243
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	5.7	0.9169
AT1G76750			Protein of unknown function (D...		Lus10004598 [exp]	5.8	0.8053
AT1G72230			Cupredoxin superfamily protein...		Lus10020944 [exp]	6.0	0.8775
AT5G03260		LAC11	laccase 11 (.1)		Lus10026512 [exp]	6.3	0.8882
					Lus10026494 [exp]	16.1	0.8880
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	17.3	0.8442
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	17.7	0.8637

Compare expression of checked genes

Lus10028141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.