Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44450 418 / 4e-148 methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042846 [exp] 555 / 0 AT5G44450 419 / 4e-148 methyltransferases (.1) Lus10042832 [exp] 291 / 1e-100 AT5G44450 216 / 2e-70 methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G157500 [exp] 463 / 5e-166 AT5G44450 424 / 6e-150 methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05891 [flax] [poplar] Methyltransf_PK AdoMet dependent proline di-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028142 pacid=23166440 polypeptide=Lus10028142 locus=Lus10028142.g ID=Lus10028142.BGIv1.0 annot-version=v1.0 ATGGAGGCAGCCGGACTTGATTCCGAAGGCCGTGAGTTCAGTAGCCCGGACGAGATGTGGACAGAATACACCGGCGATGACTCAAAGAAGCATCAGTGGT ACCGCGACGGTGTTTCTTACTGGCAAGGCGTAGAGGCGTCGGTGGATGGGGTTTTAGGGGGTTATGGGCATGTCAACGATGCCGATGTGAAGGACAGCGA AGATTTCATCAAGAGCCTTTTCTCTGAGCTCTTCCTTGACGGTGGAAGAAACCGGCACCTTGTTTCTCTTGATTGCGGCTCTGGGGTTGGGAGAATCACC AAAAATCTTCTATTAAAGCATTTCAATGAGGTTGATCTTCTTGAGCCGGTATCACATTTTTTGGATGCTGCGCGAGTAAGTTTGAGTGGTGAAACTACAA TGGCGGGATCTGATGAACACAAGGCTAGCAACTTCTTCTGTGTTCCACTTCAGGAATTCACACCACAGGCAGCAAGATACGATGTGATCTGGGTTCAGTG GTGTATCGGTCATCTCACAGACGATGACTTCATCTCGTTTTTCAGTAGAGCCAAGGCTGGCCTCAAGCCTGGCGGGTTTTTTGTGCTGAAAGAAAACATA GCGAAAAGTGGATTTGTATTGGATAAGGATGATAGAAGTATCACTAGATCTGATTTGTACTTCAAAGATCTTTTTCGCCGATGTGGACTTCATCTGTACA AAACAAAGGATCAAAGAGGGTTTCCGAAGGAACTATTTGCTGTGAAGATGTATGCTTTGACCACCGATGTGGCAAAGAGAATTGGCAAGGCCAGATCAAA ACAGCAAGCTAACAGGCCTGGAATAATCCATTGA
AA sequence Show only first row Show all	>Lus10028142 pacid=23166440 polypeptide=Lus10028142 locus=Lus10028142.g ID=Lus10028142.BGIv1.0 annot-version=v1.0 MEAAGLDSEGREFSSPDEMWTEYTGDDSKKHQWYRDGVSYWQGVEASVDGVLGGYGHVNDADVKDSEDFIKSLFSELFLDGGRNRHLVSLDCGSGVGRIT KNLLLKHFNEVDLLEPVSHFLDAARVSLSGETTMAGSDEHKASNFFCVPLQEFTPQAARYDVIWVQWCIGHLTDDDFISFFSRAKAGLKPGGFFVLKENI AKSGFVLDKDDRSITRSDLYFKDLFRRCGLHLYKTKDQRGFPKELFAVKMYALTTDVAKRIGKARSKQQANRPGIIH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44450			methyltransferases (.1)		Lus10028142 [exp]	0	1
AT5G52850			Pentatricopeptide repeat (PPR)...		Lus10014950 [exp]	3.5	0.7297
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006819 [exp]	10.7	0.5845
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10006818 [exp]	22.6	0.6362
AT5G62440			Protein of unknown function (D...		Lus10024794 [exp]	26.0	0.4644
AT5G62440			Protein of unknown function (D...		Lus10024824 [exp]	39.6	0.4734
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10006817 [exp]	55.7	0.4828
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013385 [exp]	59.0	0.4720
					Lus10015249 [exp]	81.6	0.4943
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023293 [exp]	91.0	0.4837
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009566 [exp]	126.7	0.4597

Compare expression of checked genes

Lus10028142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.