Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78680 476 / 7e-169 ATGGH2 gamma-glutamyl hydrolase 2 (.1.2) AT1G78660 473 / 1e-167 ATGGH1 gamma-glutamyl hydrolase 1 (.1.2.3) AT1G78670 428 / 6e-150 ATGGH3 gamma-glutamyl hydrolase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042847 [exp] 763 / 0 AT1G78680 481 / 7e-171 gamma-glutamyl hydrolase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387100 [exp] 556 / 0 AT1G78680 501 / 2e-178 gamma-glutamyl hydrolase 2 (.1.2) Potri.003G026800 [exp] 556 / 0 AT1G78680 501 / 8e-179 gamma-glutamyl hydrolase 2 (.1.2) Potri.011G107600 [exp] 542 / 0 AT1G78680 489 / 5e-174 gamma-glutamyl hydrolase 2 (.1.2) Potri.012G110400 [exp] 536 / 0 AT1G78680 478 / 1e-168 gamma-glutamyl hydrolase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF07722 [flax] [poplar] Peptidase_C26 Peptidase C26
Representative CDS sequence Show only first row Show all	>Lus10028143 pacid=23166559 polypeptide=Lus10028143 locus=Lus10028143.g ID=Lus10028143.BGIv1.0 annot-version=v1.0 ATGCCCTCTAACGTTGTCTCTAATTCCCTCGCGGCCGGCGTCGACTTCTCCAACGACGCAGCCTCCCGCTCTTCTTCTTCTTCTCCTCCCTCCACCATAC TCGGTACCTCCCTCGCCTCCTCTTCCAATTCTGAGCTGCCGGAGATGTGGAATTACTTGTGGATCCCTTTCCTCCTTTCATTTTCCAAGGCATTAGGCGT GGTCAAAGCCTCCGATGATGCTTTCCGGTCAACGTCTGTTCTTCGGATCCAACTTTCGGATGGCTCCGCAGCTTCCGATGGCTTGCCTTCGGTTCCTAAG TGTCCGGCGCTGAACCCCAATCTTAACTACCGGCCGGTGATCGGAATTGTAAGTCATCCTGGCGATGGTGCCTCCGGGAGGCTGAGTAACGCCACCAATG CGTCGTATATCGCAGCGTCGTACGTCAAGTTCGTTGAATCCGCTGGCGCTCGGGTGATTCCCCTTATCTACACCGACCCTGCAGACGTTCTTTTCCAGAA GCTTGATTTAGTGAATGGTGTCCTCTTCACCGGAGGCTGGGCTAAGAAGGGTTTGTACTTCGACCGAGTGAAGGAAATTTTTGAGAAAGCTTTGGCCAAG AATGATGCTGGTCACCACTTCCCAGTGTATGCCATCTGCTTGGGTTTTGAACTCTTGACGATGATTGTCAGTAAGGACAATAACATTCTGGAAACTTTTA GTGGCAAGGATCAAGCTTCCTCTGTGCAGTTTGTGAAAAACATAAATACTGAAGGAACTTTGTTTGAAAGGTTCCCACCTTGTCTGCTTGAAAAAATGAG TACAGAATGTCTCGTCATGCAAAACCATCAATATGGCATCTCACCTGAACGGCTTCTGGGAAACACTGATCTTTCAAGTTTTTTCAAAATTTTGACAACG AGTACAGATGAAAATGATGAGGTCTATGTATCGACCGTACAAGCATCCAATTATCCAGTGACTGGATTCCAATGGCATCCCGAGAAAAATGCATTTGAAT GGGGTTTGTCGATGATTCCGCATTCAGGTGATGCCATTCAAGTGACTCAGAATGTTGCGAATTATTTCATCAGTGAAGCTAGGAAGTCAGTGAATAGACC CTCTGCATCAACAGTGCTGGAGAATCTGATATACAACTACAGCCCAACATACTGTGGGAAGGCCGGGAAAGGGTATGATGAAGTTTACATATTTACTTGA
AA sequence Show only first row Show all	>Lus10028143 pacid=23166559 polypeptide=Lus10028143 locus=Lus10028143.g ID=Lus10028143.BGIv1.0 annot-version=v1.0 MPSNVVSNSLAAGVDFSNDAASRSSSSSPPSTILGTSLASSSNSELPEMWNYLWIPFLLSFSKALGVVKASDDAFRSTSVLRIQLSDGSAASDGLPSVPK CPALNPNLNYRPVIGIVSHPGDGASGRLSNATNASYIAASYVKFVESAGARVIPLIYTDPADVLFQKLDLVNGVLFTGGWAKKGLYFDRVKEIFEKALAK NDAGHHFPVYAICLGFELLTMIVSKDNNILETFSGKDQASSVQFVKNINTEGTLFERFPPCLLEKMSTECLVMQNHQYGISPERLLGNTDLSSFFKILTT STDENDEVYVSTVQASNYPVTGFQWHPEKNAFEWGLSMIPHSGDAIQVTQNVANYFISEARKSVNRPSASTVLENLIYNYSPTYCGKAGKGYDEVYIFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10028143 [exp]	0	1
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	1.0	0.8796
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10030025 [exp]	2.8	0.8628
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10040620 [exp]	6.3	0.8364
AT1G04960			Protein of unknown function (D...		Lus10014626 [exp]	7.7	0.8443
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10042847 [exp]	7.9	0.8558
AT4G13270			Late embryogenesis abundant (L...		Lus10043216 [exp]	9.5	0.8075
AT5G52580			RabGAP/TBC domain-containing p...		Lus10038091 [exp]	9.5	0.8044
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10017166 [exp]	14.1	0.8171
AT1G17030			unknown protein		Lus10024442 [exp]	14.7	0.8096
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	17.7	0.8086

Compare expression of checked genes

Lus10028143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.