Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53210 475 / 1e-163 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) AT1G29025 139 / 1e-35 Calcium-binding EF-hand family protein (.1) AT1G29020 130 / 2e-32 Calcium-binding EF-hand family protein (.1) AT2G34020 129 / 8e-32 Calcium-binding EF-hand family protein (.1) AT2G34030 110 / 7e-26 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042848 [exp] 719 / 0 AT1G53210 800 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10017657 [exp] 340 / 7e-111 AT1G53210 561 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10033629 [exp] 331 / 6e-108 AT1G53210 463 / 4e-158 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375500 [exp] 457 / 3e-156 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375400 [exp] 237 / 3e-70 AT1G53210 249 / 2e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.004G052800 [exp] 231 / 1e-69 AT1G53210 313 / 2e-99 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375300 [exp] 223 / 3e-65 AT1G53210 248 / 1e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028144 pacid=23166466 polypeptide=Lus10028144 locus=Lus10028144.g ID=Lus10028144.BGIv1.0 annot-version=v1.0 ATGGCGCTTCCTAGCTCCAAACCCCAATTCCCTTCTCTCTGCTTCCTCCTCCTCTTCCTCTCCGTCGCCATCGTAGCCGTCCAGTCCCGATCTCTCCCCG AACCTTCTGATCTCCTCTCCGATGGCCAAGACCACCGCCAGTCATCCCCTGATTATCTCCGCCTCCACGGCTTCTCCACCGCCGAGCCAGTGGAGGAGTC TTGCGAGCAATCGTATGGTTTCTTACCCTGCACCACCACCGCCCTCGGTAACTCCTTCTTGATTATCGTCTATGGTTACCTCATGTTCTTGGCCGCTACT TACTTATCCAGCGGCAGTGAGCTGCTCCTTGAGATTCTCGGTCCTGGAATTGTTGGCGGTCTCTTTCTCCCTGCTCTTGGCGCACTCCCTGATGCCATGC TCATCCTTGTGTCTGGGCTTTCGGGGAGTGCAGAGACTGCTCAAAGTCAAGTCTCTGTTGGGATGGGTTTGCTGGCTGGCTCAACTGTCATGCTCCTTAC CATTATTTGGGGAACTTGTATCGTTGTCGGCAAGTGTGATATCCGGGAGTCGAATAATATTGCCATTGATGGCCAGAACACCAGAGGATTCGACCTAACT GGTTCCGGTGTCAGCACTGATATTTGGACTTGTTATGCTGCAAGGATAATGGCTCTCTCCGTTATCCCATTTATCATTGTTCAGTCGCCACAAATGCTTC ATACACCCGCTGCAAGGCAGGTGGCCGTCTTGATTGGCCTTATTGTATCTCTTACAATGCTGGTTTCTTATTGCGTCTACCAGGTCTTTCAACCATGGGT TCAGAGAAGAAGACTCGCTTTTGCGAAGCATAAACATGTGATATCTGGAATTTTGAGACATTTGAAACAGCGTTCCCTTGGGAGGCTTCTGGATGATGAG GGTCAACCCGACACAGATGTCATAAGAAAGCTGTTTGGAACAGTTGATCAAGATAAAGATAATTATGTCTCAGCATCTGAACTGAAAGCACTAATTATAG GAATAACTTTTGAAGAAGTGGACTTTGATAGGGATGATGCTGTGTCTAAATTGATGAGTGACTTCGATACGTCACTTGATGCAAAGATCGATGAGAATGA GTTTATTCTTGGTATAACAAAATGGCTTAATGAGGCGAAGGGAACAGGACCTGCAGCTCCTGATGCTGGTCCTCGGACAATGAAGTTCATAAATGATTTC CACGACCTATACGGGGCGGTAACGATGAACAATGTTCTGTGCCTATCGGTGTTCTTGGGGATCGTGTACGCAAGGGGATTGGTTTGGGACTTCTCATCAG AGGTGCTGGTTATCCTTATAGTGTGTCTGGTGACGGCTGCCTTTGCAAGCTTCCGAACCACATTCCCTCTTTGGACTGCTTCGATTGCTTTCCTGCTTTA CCCATTCTCCCTGGCGCTGGTATATGTTCTTGATTATGTCTTTGGTTGGTCGTAG
AA sequence Show only first row Show all	>Lus10028144 pacid=23166466 polypeptide=Lus10028144 locus=Lus10028144.g ID=Lus10028144.BGIv1.0 annot-version=v1.0 MALPSSKPQFPSLCFLLLFLSVAIVAVQSRSLPEPSDLLSDGQDHRQSSPDYLRLHGFSTAEPVEESCEQSYGFLPCTTTALGNSFLIIVYGYLMFLAAT YLSSGSELLLEILGPGIVGGLFLPALGALPDAMLILVSGLSGSAETAQSQVSVGMGLLAGSTVMLLTIIWGTCIVVGKCDIRESNNIAIDGQNTRGFDLT GSGVSTDIWTCYAARIMALSVIPFIIVQSPQMLHTPAARQVAVLIGLIVSLTMLVSYCVYQVFQPWVQRRRLAFAKHKHVISGILRHLKQRSLGRLLDDE GQPDTDVIRKLFGTVDQDKDNYVSASELKALIIGITFEEVDFDRDDAVSKLMSDFDTSLDAKIDENEFILGITKWLNEAKGTGPAAPDAGPRTMKFINDF HDLYGAVTMNNVLCLSVFLGIVYARGLVWDFSSEVLVILIVCLVTAAFASFRTTFPLWTASIAFLLYPFSLALVYVLDYVFGWS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53210			sodium/calcium exchanger famil...		Lus10028144 [exp]	0	1
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	1.0	0.8720
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	3.2	0.8403
AT3G57910			D111/G-patch domain-containing...		Lus10021033 [exp]	6.0	0.8392
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	6.9	0.8246
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10036746 [exp]	8.1	0.8239
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	12.2	0.8077
AT1G56220			Dormancy/auxin associated fami...		Lus10015193 [exp]	13.3	0.7554
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006173 [exp]	14.7	0.7318
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016521 [exp]	15.8	0.7847
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026876 [exp]	20.0	0.7706

Compare expression of checked genes

Lus10028144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.