Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 227 / 1e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 214 / 6e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 208 / 2e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 174 / 1e-51 SGNH hydrolase-type esterase superfamily protein (.1) AT1G53920 109 / 8e-27 GLIP5 GDSL-motif lipase 5 (.1) AT5G03590 105 / 1e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75930 102 / 1e-24 EXL6 extracellular lipase 6 (.1) AT1G20120 100 / 3e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 97 / 2e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75920 96 / 4e-22 EXL5 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042849 [exp] 590 / 0 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003253 [exp] 237 / 2e-75 AT5G03610 397 / 2e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035600 [exp] 231 / 4e-73 AT5G03610 397 / 7e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10043441 [exp] 177 / 4e-54 AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034139 [exp] 167 / 3e-49 AT5G03610 187 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026074 [exp] 102 / 4e-24 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 100 / 8e-24 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002770 [exp] 98 / 2e-22 AT1G29670 307 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 96 / 4e-22 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237000 [exp] 247 / 1e-79 AT5G03610 352 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G406500 [exp] 242 / 1e-77 AT5G03610 425 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236800 [exp] 226 / 1e-71 AT5G03610 255 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236951 [exp] 212 / 3e-66 AT5G03610 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G053100 [exp] 201 / 9e-62 AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G230100 [exp] 142 / 3e-40 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G127100 [exp] 104 / 3e-25 AT1G71120 479 / 9e-171 GDSL-motif lipase/hydrolase 6 (.1) Potri.017G134701 [exp] 103 / 1e-24 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.003G071500 [exp] 102 / 3e-24 AT1G53920 436 / 3e-153 GDSL-motif lipase 5 (.1) Potri.003G071400 [exp] 100 / 7e-24 AT5G40990 387 / 1e-133 GDSL lipase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10028145 pacid=23166495 polypeptide=Lus10028145 locus=Lus10028145.g ID=Lus10028145.BGIv1.0 annot-version=v1.0 ATGGTCTTGTTTTCTGGGTCTAGTCTTGGAACCGGAGAAGCTTTGACGACTTCCCGGCGAGCAAAGAGGGACGCACGTCAGCACCACAGTCACAACGGCC ACGCTAAGCTCTTTGTTTTTGGGGACTCTTACGCCGACACTGGAAATTTCGAGTGGCACAATGGCTCCTGGTTGCCGCCTTATGGGATCACTTTCCCCGG AGTCCCCGCCGGCCGCTTTTCCGACGGCCGCGTCCTCACAGATTACATTGCTGATTTCCTTGGAATAAAGAGTCCGATTCCGTATCAACAAATAAGAGCT AGGAAGGGCAAGGAACAACTCAAGTGGGGAGTAAATTTCGCACACGGCGGGACCGGAGTCTTAAGCTCCATCTCAAAGGGCCCCATCATCGGAAAACAAA TCACTCAACTCCGGCAGCTGATACGCCACCGTTTCTACAACCAAACTGACCTCAACAATTCCGTCGCCGTCGTTGCAGCCTCCGGCAACGATTACAAAGG CGCCACATTCCAGAATGTGACCAAGTTGACGAGGAGGATAATAAAGCAGTTGAAGGTAGAACTGAGACGAATCCCAGAAGAAACAGGAATCAGGAAAGTA GGGGTTTTACTGATGCAGCCGGCCGGATGCTTGCCGCAAAGCGTAGGGCCTTCAGCGATGTACAGCTCCAAATGCAATGGAACTTACAACGTTGCCATCC GTAGGCATAACAAGCTGTTGAGGGAAGCTGTCCGAGATTTGAACTTTGAACGACGACGAACCAGGAACCGTAGCTTTGTCGTTTTGGATCTGTTCAAGGC CTTCACCGTTGCACTCAAGGAGTACAAGAATCCGCTGAAGCCATGCTTGAGTACGGAGAAGGGGGGATATGCGTGTACTCCTCAGAATGCACAGCTAAGG GACTATAGTGTCTGTAAACACCCAGAGCTGTCATTTTTCTTTGATTGTCATCATCCTTCTCAAAATGGCTGGAAGTCCATTTATTTGGCTTTGCACCATT CCCTCCACCAACTTTATCACTCTCATTAG
AA sequence Show only first row Show all	>Lus10028145 pacid=23166495 polypeptide=Lus10028145 locus=Lus10028145.g ID=Lus10028145.BGIv1.0 annot-version=v1.0 MVLFSGSSLGTGEALTTSRRAKRDARQHHSHNGHAKLFVFGDSYADTGNFEWHNGSWLPPYGITFPGVPAGRFSDGRVLTDYIADFLGIKSPIPYQQIRA RKGKEQLKWGVNFAHGGTGVLSSISKGPIIGKQITQLRQLIRHRFYNQTDLNNSVAVVAASGNDYKGATFQNVTKLTRRIIKQLKVELRRIPEETGIRKV GVLLMQPAGCLPQSVGPSAMYSSKCNGTYNVAIRRHNKLLREAVRDLNFERRRTRNRSFVVLDLFKAFTVALKEYKNPLKPCLSTEKGGYACTPQNAQLR DYSVCKHPELSFFFDCHHPSQNGWKSIYLALHHSLHQLYHSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	0	1
					Lus10015828 [exp]	1.4	0.9950
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	2.0	0.9934
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	2.4	0.9930
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	3.5	0.9885
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	4.2	0.9867
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002933 [exp]	4.9	0.9815
AT2G04865			Aminotransferase-like, plant m...		Lus10025434 [exp]	5.0	0.9546
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	5.9	0.9868
					Lus10000028 [exp]	6.2	0.9720
					Lus10013654 [exp]	6.5	0.9687

Compare expression of checked genes

Lus10028145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.