Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042849 [exp] 443 / 9e-149 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017946 [exp] 73 / 3e-14 ND / Lus10013688 [exp] 55 / 6e-08 AT1G29010 49 / 2e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375600 [exp] 56 / 4e-08 ND / Potri.011G097050 [exp] 46 / 1e-05 ND / Potri.018G084100 [exp] 42 / 0.0004 AT4G28840 108 / 1e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028146 pacid=23166455 polypeptide=Lus10028146 locus=Lus10028146.g ID=Lus10028146.BGIv1.0 annot-version=v1.0 ATGGGTCAAGATCAGGATGATGAAACCACCCACAGTATGCAAAACTATTCCAACAATACTCGTATTGGAAGTAATGGTCGACCGACGAAGAAACAGAGGC AAAAGAAAGTGCCACAGAGAGGACTTGGAGTTGCAGAATTGGAAAGGATCCGTCTTGAAGAACAGCAACATCATCATCTTCAGACAACACGTCCACCAAT GGAATCCAACCAAACATCATGCATATCATCTACGACATCTTCAACTTTCCAAAAACACCCCCACCGCCAATCATTTGATCATCTGTCGTCTCAGAAGAAG AAGTTGACAAATTCAGAAAACATGAACAACAAGTATGGTAGCATTAGCAATCATTATAATTCGTCATCCTCCATTCCACTGTCCACACAAACTTGCTGGC AGAATCCGCCGGAAAAAAGAGGGGGAAATTGTGATTCAGATATGACGATGCCCCCATGGAATCTAACCTCCAGCTCCAACAGTAGTGCGTTTCCTTTATG GCCAGAGCCACTTCACCACAGAGTAGAGTATCAACATCATCGTCAGCCATTATTGCCACCCTCTTCTTCTGTTTCTTCTCCCACCTCCTCAAAGATGAAT GTTCAAGTACCCAAGGCGTGTAGCCGTACATCATCATCAACAGGAATCAGAAATCACCAAATGGAGGCTTTTTCAAACAAAAGTTACTGTTCTCATTACA ACCAGAACGACTTTTCAACAGCTTTAGAAGAAGGGGATCATCGGAATAAGCTTGCAATTACAGCACAGTCCAGTACTGGAATTAAAAGACCATATCATCA TCATCATCATCAAGACAACAACTCCATAGGTGGTAATGGGAATGACAGTACTACCCTTACTCCTCCTGCTGCTCCACATTTCATGTACCACCACAACAAA ACCAGCAACAACAACAACAACAGCAACAACAATAAGCAGCTCCTCCCATCAGTAGTTCATCATCATCATCACCACGAATCTCCTTCGTCATTCAATTTCG GATCGGGCCCTGTTTTCAACTTCTCTTCCCACCCTCCCGCCTTTTTCAGAGATGGATGTTCGAGTTGGAACATGATGAGATGGCCGAGCGATTCGAGAGA GAGCGATGGGATGGGATTCTCTTCGGACTACCTCACCGCTAATACTCTTGCTCCAACCACCGAAGCAGCCACCACAACAGGAGGAGGAGCAAGAGCACCG TGTGGCAGTTCGAGTAACAACAATTTCAAAGTACTCAACGATCCGAACTTTCATTTCGGTGCCGGTAAGAAATTCGAAATTGATCCACCATCGTCATCAT CATCGCTTCATAGTTATTACCAGCATCACCACCACCACCATCAAGTGAAAGGTAGACTAGTTGCAGATCAAGGGACTGATTGGCCCCAGAGTACTGCATT GTTAATGAAGGATACAACATTAATCAGCAGCCATGATAATGATGGCAATCATCATCCAGATGAATCTGAAAATTTAGACCTCAACTTAAAGTTATAA
AA sequence Show only first row Show all	>Lus10028146 pacid=23166455 polypeptide=Lus10028146 locus=Lus10028146.g ID=Lus10028146.BGIv1.0 annot-version=v1.0 MGQDQDDETTHSMQNYSNNTRIGSNGRPTKKQRQKKVPQRGLGVAELERIRLEEQQHHHLQTTRPPMESNQTSCISSTTSSTFQKHPHRQSFDHLSSQKK KLTNSENMNNKYGSISNHYNSSSSIPLSTQTCWQNPPEKRGGNCDSDMTMPPWNLTSSSNSSAFPLWPEPLHHRVEYQHHRQPLLPPSSSVSSPTSSKMN VQVPKACSRTSSSTGIRNHQMEAFSNKSYCSHYNQNDFSTALEEGDHRNKLAITAQSSTGIKRPYHHHHHQDNNSIGGNGNDSTTLTPPAAPHFMYHHNK TSNNNNNSNNNKQLLPSVVHHHHHHESPSSFNFGSGPVFNFSSHPPAFFRDGCSSWNMMRWPSDSRESDGMGFSSDYLTANTLAPTTEAATTTGGGARAP CGSSSNNNFKVLNDPNFHFGAGKKFEIDPPSSSSSLHSYYQHHHHHHQVKGRLVADQGTDWPQSTALLMKDTTLISSHDNDGNHHPDESENLDLNLKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028146 [exp]	0	1
AT5G24130			unknown protein		Lus10039333 [exp]	1.7	0.8546
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10030973 [exp]	2.0	0.7956
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	5.7	0.8192
AT5G24130			unknown protein		Lus10039332 [exp]	7.9	0.8047
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	13.2	0.7755
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023946 [exp]	18.4	0.7881
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10016324 [exp]	18.5	0.7768
AT2G34930			disease resistance family prot...		Lus10016325 [exp]	27.7	0.7710
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10022036 [exp]	30.0	0.7589
AT4G30040			Eukaryotic aspartyl protease f...		Lus10004064 [exp]	31.2	0.7371

Compare expression of checked genes

Lus10028146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.