Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45900 218 / 5e-63 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT4G00440 196 / 2e-54 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT1G01695 103 / 2e-23 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G07620 70 / 1e-12 ATOBGM GTP-binding protein Obg/CgtA (.1) AT1G63670 66 / 5e-11 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT3G61380 62 / 7e-10 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT5G02390 62 / 8e-10 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G39435 47 / 3e-05 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) AT2G20240 44 / 0.0002 Protein of unknown function (DUF3741) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042850 [exp] 960 / 0 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10014776 [exp] 351 / 4e-112 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10036356 [exp] 343 / 7e-109 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10018833 [exp] 186 / 3e-50 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10017797 [exp] 177 / 7e-48 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10002008 [exp] 91 / 7e-19 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 82 / 5e-16 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10016715 [exp] 72 / 4e-13 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10040814 [exp] 56 / 5e-08 AT5G02390 129 / 4e-31 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084600 [exp] 455 / 4e-151 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G160000 [exp] 447 / 1e-147 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.001G103400 [exp] 112 / 4e-26 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.001G239500 [exp] 89 / 3e-18 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.016G095500 [exp] 87 / 1e-17 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 79 / 5e-15 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.010G211700 [exp] 44 / 0.0004 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028147 pacid=23166460 polypeptide=Lus10028147 locus=Lus10028147.g ID=Lus10028147.BGIv1.0 annot-version=v1.0 ATGGGGAAAGAGACACCACAAGTCTCTACTGGTCATACATCAAAGAGGTATTCCAATGAGGTCCGGGTGTCGGGAAATGGTGACAGAAGATTCAAAGAGA ACACTGGAAAGAGTTCATCAGGCAAAGAACACTTCTTCCTTGAAAAGATTGCTAGACCAAAGGCGGCTCATGTGACTGTCAAGCCCAAAGGATCTGAACA AAGTATAGAAGTTGAACCCTCTGATTGTATCAACCCGAGGTTATCCAATATCTACATAGAGGCTAAGAAACATCTTTCTGAGATGCTGATCACTGGGACT GATGATGTGGACTTGCCAAGTGGTCAAGTCCCTAAACCGCTAGGGAGGATTCTATCCTTTCCAGAGTACAACTTTTCTCCTGTTAGCAGTCCTTCAAGGG ACTTGAGACCTAGTTTTGTAACAGCACAGATGAGATTGCCCAGCATGGACTCAGTTACAAGGCGGGCTAGCAATATCAGCCATATGGGTAGGACACCACC GAGTTCGGAAGTTCCATCATTGATCTCTGAAGACAGTACTGATATTAAAGCACAAGTTCTTTCTGATCCAACTTCGTGTTCCTCAAGTGAATTGGTTCAT GACGGCGATGGGGAGAAATCTGTTGGTTCAACAAGAGATGAAATAATGACTCGGGGCCAGGATGTGGAGATTGAAAATTCCTTGGAGATTATAGCCCCAG AAGAAAGAATCATCGACAGTAATCTTGCTCAAACAAGTAGCTGTTGTGTCATCATAAATGATCGAAATGCCGATTCCTCTGATGCTGGAGATGAGAAAGA GAAGAATGAGTTATTGAAGCATGAAAGTTCTCTGTTTGAATCTCCATCCGCCTCATCAAATGTCAAGCATAGGTTAGAACCCTCTGAGATTGTCCACCGA CCAAGTCCAGTGTCTGTCCTGGAGCCACTTTTTCTAGAGGAGGATATAAGTCCAGCGGCCAGCAGAACCCAACATGTTGAACTACTGGTGCAACCATTGA GAATCGATTTCGAGGAGCAAGATTCTTCATCTAGAGATTGGGGTACCACCTCTCCTTCAGAAGCTAGGGACGAAAATCCTATGCTTGAGTACATTAAAGC TGTACTTCTGTCCTCAGGTTTGAACTGGGAAGAGTTCTACTTAATGTCGGATTCTTCAGAGCAGATACTCGACCCGTCCAGTTGCAACGAGTTTGAGTTT TTGCCTAACCATCTTTGCTGTGACAAGCAACTCCTCTTCAATTGTATCGATGAAGTTTTGATGGAAGTATATGATTCCTATTTTGGCTGCTCACCTGGGC TATCGGTAGGGAAGCCGGTTATCCGTCCTATTCCGGACATGAAGCATACCGTTGACGAGGTATGGAGAAGACTACATTGGCATCTTCTTCCATTTCCGTC CCCTCGTACTCTAGATCAAGTCGCGAGGAAAGACATGATGAAGAACGGCGTTTGGATGGACATTAGACGCGATACCGAAACTGTCCTTGTAGACATCAGC AACGTTGTTTTCCAGGAATTGATTGAAGAGATTGTGTTTTGCCTCTCCGAAAGTCGGTAG
AA sequence Show only first row Show all	>Lus10028147 pacid=23166460 polypeptide=Lus10028147 locus=Lus10028147.g ID=Lus10028147.BGIv1.0 annot-version=v1.0 MGKETPQVSTGHTSKRYSNEVRVSGNGDRRFKENTGKSSSGKEHFFLEKIARPKAAHVTVKPKGSEQSIEVEPSDCINPRLSNIYIEAKKHLSEMLITGT DDVDLPSGQVPKPLGRILSFPEYNFSPVSSPSRDLRPSFVTAQMRLPSMDSVTRRASNISHMGRTPPSSEVPSLISEDSTDIKAQVLSDPTSCSSSELVH DGDGEKSVGSTRDEIMTRGQDVEIENSLEIIAPEERIIDSNLAQTSSCCVIINDRNADSSDAGDEKEKNELLKHESSLFESPSASSNVKHRLEPSEIVHR PSPVSVLEPLFLEEDISPAASRTQHVELLVQPLRIDFEEQDSSSRDWGTTSPSEARDENPMLEYIKAVLLSSGLNWEEFYLMSDSSEQILDPSSCNEFEF LPNHLCCDKQLLFNCIDEVLMEVYDSYFGCSPGLSVGKPVIRPIPDMKHTVDEVWRRLHWHLLPFPSPRTLDQVARKDMMKNGVWMDIRRDTETVLVDIS NVVFQELIEEIVFCLSESR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	0	1
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10042850 [exp]	2.0	0.9103
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	2.0	0.9131
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	2.2	0.9044
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	3.0	0.9125
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	4.0	0.8829
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Lus10004896 [exp]	4.2	0.9006
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	4.7	0.8773
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	5.3	0.9138
AT1G04910			O-fucosyltransferase family pr...		Lus10017105 [exp]	7.9	0.8496
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10025995 [exp]	8.9	0.8614

Compare expression of checked genes

Lus10028147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.