Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00440 83 / 3e-17 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT2G45900 57 / 7e-09 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042850 [exp] 550 / 0 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10036356 [exp] 88 / 5e-19 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10014776 [exp] 85 / 7e-18 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084600 [exp] 199 / 3e-57 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G160000 [exp] 181 / 4e-51 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028148 pacid=23166569 polypeptide=Lus10028148 locus=Lus10028148.g ID=Lus10028148.BGIv1.0 annot-version=v1.0 ATGGCAAAGAAATCTCAAAGACGTTTAGATAGAAATGCTAAGCCAGGCTGTATGTGGGGCCTCATTAACTTGCTGGATTTCCGCCATGGTCGAACAACTC AGAAGCTGCTTCCAGACAGGAGGCGTGAGACTAAGCGTGTCATTGGTGGTAGCGGACATAAAAATATTAAGCTTGACGACCAGAAGGCCTTGGATGGCGA TGGCAATTTGGCTATGGCATCTGACTTTGGCAAGCCAAGTGTCAAGAAACTCATAGAAGAAGATTTGTTAAAGGAGCACAAGGCAAAGAGTGAGATAAGT GACAGTGAAGTGAAAGCAAATTCAGGAGAGGACCTCCAGAAAAAGAAAAACAGCAAGAGAACAAAGAGGAGTCGCTCAAAAAGCTGTGAAATTCATGTTG AAGACCTGAATGCCGTAGATATTAGGGAAGCTGGACAGCCTTATCCTCAGTATTTAGAGAAGCAATCTAGCATTACTGTTGACGTAGGTGAACTAATAGA GGAGTTCTGCCTCCAGCTCCAACAGAAAGGTAGTAGTAGTTGTATAATGCACGGAGAGAGTTGTGAATTTCATCAGTCAAAACAGAATAATCTCGACTTT GAAGAGAGATGGAGTAATGCAATCAAGGTATTTGTTAGTCAGAAGGTGAATGAAAGGAGGAAGCTTTTAAACGACGAAAGGAATGTGTGCAGCTCCAAAG AACTTAAGGATGCACTTCACAATTTGTTTTCAGATGAGGGGTTCTCTTCAAAACTCTCGCAAGGTCAAAAGTGTATAATAATGAAGCAATTGGAGAAAGC TTGGAACTCGCAAGTAGAAATCGATGAAGACTCGACATTGGCTGTGAGAAGAAATACGGAAGATCAGGACCTCTGCGAGTTGAACAAATCCCATGAACCT GCTGGCACCAAGCATAGGAGATTTTTTTTATTGCAAATCCCCGTGCGAACACCCCTTCAAGGGAAGCTGACTCCTTGA
AA sequence Show only first row Show all	>Lus10028148 pacid=23166569 polypeptide=Lus10028148 locus=Lus10028148.g ID=Lus10028148.BGIv1.0 annot-version=v1.0 MAKKSQRRLDRNAKPGCMWGLINLLDFRHGRTTQKLLPDRRRETKRVIGGSGHKNIKLDDQKALDGDGNLAMASDFGKPSVKKLIEEDLLKEHKAKSEIS DSEVKANSGEDLQKKKNSKRTKRSRSKSCEIHVEDLNAVDIREAGQPYPQYLEKQSSITVDVGELIEEFCLQLQQKGSSSCIMHGESCEFHQSKQNNLDF EERWSNAIKVFVSQKVNERRKLLNDERNVCSSKELKDALHNLFSDEGFSSKLSQGQKCIIMKQLEKAWNSQVEIDEDSTLAVRRNTEDQDLCELNKSHEP AGTKHRRFFLLQIPVRTPLQGKLTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	0	1
AT3G27325			hydrolases, acting on ester bo...		Lus10032122 [exp]	1.4	0.9494
AT1G72410			COP1-interacting protein-relat...		Lus10008140 [exp]	2.4	0.9387
AT5G07740			actin binding (.1)		Lus10015724 [exp]	3.5	0.9335
AT1G31780			unknown protein		Lus10037281 [exp]	4.5	0.9360
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	5.3	0.9138
AT5G06970			Protein of unknown function (D...		Lus10008663 [exp]	5.7	0.9302
AT3G08530			Clathrin, heavy chain (.1)		Lus10030393 [exp]	6.7	0.9379
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	7.3	0.9300
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	7.7	0.9363
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	14.8	0.9163

Compare expression of checked genes

Lus10028148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.