Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 432 / 5e-151 Protein kinase superfamily protein (.1) AT3G09010 353 / 6e-120 Protein kinase superfamily protein (.1) AT1G56130 333 / 4e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 332 / 6e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 331 / 1e-104 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 330 / 4e-104 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56145 329 / 7e-104 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 327 / 4e-103 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 323 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 321 / 4e-101 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042851 [exp] 686 / 0 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10042460 [exp] 428 / 9e-150 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 428 / 4e-149 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10004825 [exp] 358 / 7e-122 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10002494 [exp] 340 / 2e-114 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1) Lus10019933 [exp] 330 / 3e-111 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10026503 [exp] 330 / 3e-111 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10023510 [exp] 327 / 3e-109 AT1G16670 331 / 1e-110 Protein kinase superfamily protein (.1) Lus10040392 [exp] 325 / 3e-108 AT3G09010 323 / 2e-107 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G393200 [exp] 464 / 1e-162 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 448 / 2e-157 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 436 / 1e-152 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 433 / 1e-151 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 366 / 3e-125 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 354 / 2e-120 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 350 / 5e-119 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 347 / 7e-118 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 342 / 6e-116 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.011G073066 [exp] 336 / 3e-113 AT1G07650 488 / 1e-164 Leucine-rich repeat transmembrane protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028149 pacid=23166430 polypeptide=Lus10028149 locus=Lus10028149.g ID=Lus10028149.BGIv1.0 annot-version=v1.0 ATGAAGTCTTGCTTATCTTCCTTCTTCAAGAAGAAGGGAACTGCCCCGCTCGAAAAGTCTAGGACGATTGATCAAAGTATATCAAACATACACAACGTAC GCTTGTATACCTACAGAGAACTGCAGGTGGCAACCGGAAATTTTAACCGATCGAGTAAAATCGGAGAGGGGGGTTTCGGTTCTGTCTACAAGGGGACACT TGAAGATGGTACTGTTGCTGCCATTAAGGTCTTGTCTGCTGACTCGAGGCAAGGCACCCGAGAATTCTTGACAGAAATAGAAGTGATTGCTAATCTAGAT CATGAAAACCTGGTCAAGTTGTATGGTTGCTGTGTGGAAGAAAACCACAGAATTTTGGTATATGGTTATCTTGATAATAACAGTCTTGCGCAGACACTAC TTGATGGAAGATCTGGGAGGAGCATTGATCTCAACTGGCTTGCAAGGTGCAAAATATGCTTTGGAGTGGCTGAAGGGCTTCGATTCCTTCATGAGGAAGT CCAGCCACGTATAGTGCATAGGGATATCAAAGCAAGCAACATACTTCTCGACAAAGAGCTCTCACCGAAAATATCAGACTTCGGCCTTGCAAAGCTTTTC CCATCACACCTCACACATATTAGTACCCGTGTTGCGGGAACTCTAGGATATCTCGCACCCGAATATGCGATTTGGGGTCAGTTGACTAGAAAAGCAGACG TATATAGTTTTGGTGTACTTGTTTTGGAAATTGTTAGTGGGAGACCCAACAAGGAAAGAGCATCGCTTCCGGAGGAGGATCATCTTCTTGCAATGGCATG GAAACTCCATGGTAAGGGGAAACTGGAGAGTTTGGTCGACGCTAGTCTCGCTGGGGATTACGATTCTGAAGAGGCATGCAGATTCCTTAAGATTGGGCTA CTCTGCACTCAGGAGAAGACCAAACTTCGGCCATCGATGTCTACTGTCGTCGAGATGCTGAGAGGTGAATGTTCAATTGACAAGGAGAAAATAACGGAGC CTGGTTTTGTTGCAACAAAAGGGAAAGTGGCAAGGAAATCACATGATGTTGATGCTGGATCTTCAGGTTCATCAAGCAAGCTGGGAAAGAAATCTTCGTC ATCATATACAATGGCAACGTCACATGGTACTATGACCTTCACTTCCATAAACGATCGACGTAACTAG
AA sequence Show only first row Show all	>Lus10028149 pacid=23166430 polypeptide=Lus10028149 locus=Lus10028149.g ID=Lus10028149.BGIv1.0 annot-version=v1.0 MKSCLSSFFKKKGTAPLEKSRTIDQSISNIHNVRLYTYRELQVATGNFNRSSKIGEGGFGSVYKGTLEDGTVAAIKVLSADSRQGTREFLTEIEVIANLD HENLVKLYGCCVEENHRILVYGYLDNNSLAQTLLDGRSGRSIDLNWLARCKICFGVAEGLRFLHEEVQPRIVHRDIKASNILLDKELSPKISDFGLAKLF PSHLTHISTRVAGTLGYLAPEYAIWGQLTRKADVYSFGVLVLEIVSGRPNKERASLPEEDHLLAMAWKLHGKGKLESLVDASLAGDYDSEEACRFLKIGL LCTQEKTKLRPSMSTVVEMLRGECSIDKEKITEPGFVATKGKVARKSHDVDAGSSGSSSKLGKKSSSSYTMATSHGTMTFTSINDRRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	0	1
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	1.0	0.9101
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10010651 [exp]	1.7	0.8974
					Lus10006003 [exp]	2.0	0.8951
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10041898 [exp]	3.0	0.8792
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10026912 [exp]	3.7	0.8810
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	4.2	0.8980
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10035541 [exp]	5.3	0.8727
AT5G65880			unknown protein		Lus10039652 [exp]	5.7	0.8804
AT4G37020			unknown protein		Lus10000435 [exp]	7.4	0.8783
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	7.7	0.8760

Compare expression of checked genes

Lus10028149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.