Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08720 45 / 4e-05 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004124 [exp] 89 / 1e-19 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 85 / 3e-18 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G047600 [exp] 53 / 8e-08 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 50 / 8e-07 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028150 pacid=23166570 polypeptide=Lus10028150 locus=Lus10028150.g ID=Lus10028150.BGIv1.0 annot-version=v1.0 ATGAAGCACATTTTCAAGGGAGAGGCGGCTCTGCTACCGAGTCCTTGTCGAGACAGTTCTGGGTATTGCATTACTTGGCAGGAGAAGGTTGTAGATGGGT TTTATGACCCGAGTTCAGAAAATCAACGGAAAATGCCTTCCCCTGGGGACCTGGAAATGAATTCTGGCATTGAAGCAGCGGTAGTGAATTGCACAATTGA TCATCATAACTTGGAAGAGTTGGCTGACACTATACATCTACCTAGTCGATTTGGCAATGCTGCTGGGGTTGCTTCTTCTGGACTATCCAAGGAAGTAACT CATTCTAGTCAAGTTGGTAATCCATTTTCAGATACAGCAAGTTCTTTGCATGCTGTTGGTGGTGGTGCTCGGATGAATGTAAATATAGTTCCTTATAATC AGAATGGCTCAGAAGATACGGCCGACCTTTCTACACGTCTCTGCATGAAGCCAAATGTGATACTCCGTATGTTGATGATGATGATGGTGCTGTTATGGCC ATGCATCTCGAACTCAGCAGCAGTCACCGATCAGACTTACCATAAGGATGGTCCCAATTCAGATAAAGCTTCTTGGAGTCCAAAGCCGGATAAGCCTCGA TCTTCCTTGTTGGCTGATGATAATTATATTAGAATGAAAATTCGTTCTCAACAACTGCCTCTGGTTCTCCAGCATATTCTGATGGTAATGAGTTATCACC AGATCTTGAGTTATTGGAACTTTACACCTCTCTTGATGATGGAGAAGGAATACGTGGTGTATCGAACGATCCTGGGGGAGTATTTCAGTTATCTAAGTGG TTAA
AA sequence Show only first row Show all	>Lus10028150 pacid=23166570 polypeptide=Lus10028150 locus=Lus10028150.g ID=Lus10028150.BGIv1.0 annot-version=v1.0 MKHIFKGEAALLPSPCRDSSGYCITWQEKVVDGFYDPSSENQRKMPSPGDLEMNSGIEAAVVNCTIDHHNLEELADTIHLPSRFGNAAGVASSGLSKEVT HSSQVGNPFSDTASSLHAVGGGARMNVNIVPYNQNGSEDTADLSTRLCMKPNVILRMLMMMMVLLWPCISNSAAVTDQTYHKDGPNSDKASWSPKPDKPR SSLLADDNYIRMKIRSQQLPLVLQHILMVMSYHQILSYWNFTPLLMMEKEYVVYRTILGEYFSYLSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028150 [exp]	0	1
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10021232 [exp]	2.2	0.9011
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10005643 [exp]	8.2	0.8335
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	12.0	0.8715
AT5G59980			Polymerase/histidinol phosphat...		Lus10028138 [exp]	22.5	0.8531
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	23.9	0.8587
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10019797 [exp]	26.2	0.8505
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043250 [exp]	27.5	0.8402
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	27.7	0.8284
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	30.6	0.8318
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	32.9	0.8499

Compare expression of checked genes

Lus10028150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.