Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53025 387 / 3e-129 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 362 / 2e-118 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 316 / 1e-104 Ubiquitin-conjugating enzyme family protein (.1) AT2G16920 290 / 6e-87 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT2G33770 276 / 4e-83 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT4G27960 71 / 3e-14 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 70 / 4e-14 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G41700 70 / 4e-14 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G53300 70 / 5e-14 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT1G14400 67 / 3e-13 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042852 [exp] 466 / 1e-160 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1) Lus10018596 [exp] 347 / 2e-114 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10039831 [exp] 342 / 2e-112 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10005854 [exp] 295 / 2e-90 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10001214 [exp] 288 / 3e-90 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10034472 [exp] 281 / 3e-85 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10025070 [exp] 281 / 2e-84 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10037778 [exp] 262 / 3e-83 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10028152 [exp] 234 / 5e-74 ND 37 / 0.009
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G118800 [exp] 438 / 2e-147 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.001G400300 [exp] 436 / 7e-147 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G130800 [exp] 342 / 8e-112 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G052600 [exp] 299 / 2e-91 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G043500 [exp] 293 / 3e-89 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.010G146500 [exp] 271 / 2e-86 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 271 / 4e-86 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.009G136000 [exp] 281 / 9e-84 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.004G176000 [exp] 281 / 1e-83 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.013G108500 [exp] 155 / 9e-43 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10028151 pacid=23166467 polypeptide=Lus10028151 locus=Lus10028151.g ID=Lus10028151.BGIv1.0 annot-version=v1.0 ATGGAAGACGCCGACGTCGTTGAAATCTCCCCGCTCTCCTTCCCGCCTTCTCGCTCCACCAAGAAGAGAAAGCAGAAACAGGTTGCGTTCCCTGAAATAA TTGATGTTGATGCACATGATTTTGTCAGCGATGTCATAATCTTGGATAAGAAAGAGAGCAGGAAAGACAAAGGAAAAGCTATTCAGAATGATCTTAACAG TCATGCTAAAGATCAGCCTTGGAATCTTTCAACTCATTCTCATGATGTAATCAATCTAGATACGAGCTTCAACCCCGCCCTTTATGGAGCCACAGATTTT AATGGGCTTGCATCTCTACAATCTCTTCACAACAATGCAACGTTCGCCACTGGAGTTCAGACACCCATGTCGTCTCTTCTTGGTCTATTTTCCAACGCTC AACCAAATCTTAAGGGAAGTGCAGTTTCTTCTACCTTGTACGAACAAGAGCAGAATCTCAGAAATGGAATTAACTTATGGAAATCTACTCCAGTCAATCT TCCTGCTACCAATGCAGGTTTTGGGATTCCAGTGGGCTCTGCATATGATTCTTCTGCGATGAATGTACTGCCCCTTGGTGGGGCTTATCTAAATACCCGA AGTGGGAAGAAACGAACTCTTTCCCAGCATGGAGGGATTCCTCTGAATAATTCACATTTTCAAGTGTCTGCTAGTCTATTGCATGGTGACACCTCAATGA AAAGCAAGATGTGTGAAGGACCTCATGGAAGCCCAAGTGCTGAGGATGGTGATATTTTAAGGAGGTTCAACCTCTTCAAGCATTTTGATATCGTCGAAGA CCATTCAGACCATCACTATTTGGGTTCTTCTGCGAGACAGACAACAAAGAAGTGGACAAAAAGAATTCAAGACGAGTGGAAAATTCTTGAGAAGGATTTG CCAGATAGCATATTTGTGAGGGTCTATGAGTCCAGGTTGGACCTAATGAGAGCCGTAATTGTCGGGGCAGATGGCACTCCATACCATGATGGTCTATTTT TCTTCGATATCTTCTTCCCCAATGGCTACCCGAATGTTCCACCAAAAGTTAACTACCGTGCTGGCGGTCTTCGAATCAATCCAAACTTGTATGCTTGTGG AAAGGTTTGCCTCAGCCTTCTTGGAACATGGGGTGGTCAAAAGAATGAGAACTGGCAGCCTGCAGTTTCAAATGTCATGCAGGTTCTGCTTTCTATACAA GCATTGATATTGAATCAAAAACCCTACTTTAATGAGCCTGGTTATGCACGCTCAAAGGGCCAGCCTCATGGTGAAATCCAGTCGCAACTGTACAGCGAGA ATACATTCCTTCTGTCACTGAAAACAATGGTTTACACAATGAGGCAGTCACCAAAACATTTTGAGGATTTGGTGAAGGGCCATTTCTACAAGCGTGCTAA TGACATCATGGTGGCTTGCAAAGCATACAAGGCCGGTGCACAGGTGGGGTGTCTGGCTAAAGGCGGGATCCAGGATCTCGAGGAAGGAGACAAGAGCTGC TCGACGAATTTCCAGCAGTCTTTACAAGGGTACATGGACATGCTTGTGCCAGAGTTCAGCAAGATTGGATGTCGGAATTTCTCTTAA
AA sequence Show only first row Show all	>Lus10028151 pacid=23166467 polypeptide=Lus10028151 locus=Lus10028151.g ID=Lus10028151.BGIv1.0 annot-version=v1.0 MEDADVVEISPLSFPPSRSTKKRKQKQVAFPEIIDVDAHDFVSDVIILDKKESRKDKGKAIQNDLNSHAKDQPWNLSTHSHDVINLDTSFNPALYGATDF NGLASLQSLHNNATFATGVQTPMSSLLGLFSNAQPNLKGSAVSSTLYEQEQNLRNGINLWKSTPVNLPATNAGFGIPVGSAYDSSAMNVLPLGGAYLNTR SGKKRTLSQHGGIPLNNSHFQVSASLLHGDTSMKSKMCEGPHGSPSAEDGDILRRFNLFKHFDIVEDHSDHHYLGSSARQTTKKWTKRIQDEWKILEKDL PDSIFVRVYESRLDLMRAVIVGADGTPYHDGLFFFDIFFPNGYPNVPPKVNYRAGGLRINPNLYACGKVCLSLLGTWGGQKNENWQPAVSNVMQVLLSIQ ALILNQKPYFNEPGYARSKGQPHGEIQSQLYSENTFLLSLKTMVYTMRQSPKHFEDLVKGHFYKRANDIMVACKAYKAGAQVGCLAKGGIQDLEEGDKSC STNFQQSLQGYMDMLVPEFSKIGCRNFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	0	1
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	2.4	0.8271
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10034139 [exp]	2.4	0.8267
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	2.6	0.8520
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	3.5	0.8194
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10033174 [exp]	5.4	0.7617
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	5.5	0.8101
AT1G06450			Polynucleotidyl transferase, r...		Lus10017895 [exp]	6.2	0.7732
					Lus10001494 [exp]	8.9	0.7820
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	9.5	0.8069
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	9.5	0.7944

Compare expression of checked genes

Lus10028151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.