Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16900 635 / 0 Alg9-like mannosyltransferase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042853 [exp] 464 / 2e-160 AT1G16900 355 / 3e-117 Alg9-like mannosyltransferase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110800 [exp] 712 / 0 AT1G16900 764 / 0.0 Alg9-like mannosyltransferase family (.1) Potri.001G392050 [exp] 80 / 2e-18 AT1G16900 81 / 3e-19 Alg9-like mannosyltransferase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF03901 [flax] [poplar] Glyco_transf_22 Alg9-like mannosyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10028153 pacid=23166482 polypeptide=Lus10028153 locus=Lus10028153.g ID=Lus10028153.BGIv1.0 annot-version=v1.0 ATGTCCCTAACGGCTCGGCAGAGGCGTCCGGATCCATCGTCGACGGAGGCAACGCCGGAACCTTACTCGAAGGTCGATAAACCATCTAGGTCTTCCCTCA ATGAGGATCAACAACAGCTCGGATGGTTTATGCCCGTGATTGCTTTGGGGCTGCTCCGTTACATGAGTGCCACTTCCAACATCATCCATGACTGCGACGA GTTTGCTCTTCGATCCTACTTGTACATTAATCTCCATGAACTGGTCGGTCTGCCAGCTTCATGGCTGTTTAGAGATGATAAAGTGAGAGTATTCTATGCA GTAAGACTGTTCATTGGACTCATCTCTGTTATAGCAGATGCAACCCTTGTAGTGGCCCTCTCCAGGAAGTATGGCAAGCGTCTTGCTTCATATGCACTTG CAATGCTCTGCCTAACCAGTGGTTGTTTCTTCTCTAGCACTAGTTTTCTGCCAAGTTCTTTCTCTATGTATGCCATGAGTCTCTCTTCAGGGTTGTTTCT TCTTGAGAAGCCTGCTCTGGCTGTGGCTGTGGCAGCTATTGGGGTACTCCTCGGCTGGCCCTTCTCGATATTGGCTTTCCTTCCAATTACCCTTTTCTCT TTGTCCAAGAGATTCAAGATATCTTTTTTTGCGGGTGCAGTGTCGTCTCTTTCGCTTATTGTGCTTTCTGTACTTGTTGACCATCACTACTACAGGCGGT GGACATCATCCGTTTTGAATATCTTGATGTACAATGTTGCAGGAGGCGGCGAGAGCCATTTGTATGGGACTGAAGGACCTCTCTTTTACCTAAGGAATGC ATTTAACAATTTCAACTTCTGTCTGGTTCTTGCTTTACTATTGTTGGTTATTTTGCCAATTGTGAGGAGGAAGTACTCCCCTGACCTGCTGATAGTGGTC TCCCCTCTTTATATATGGTTCCTCTACCCAGTCTATCCTCTTGTTTGTGTTGCTGCTTCTGCGGTTATTGAGAGCTTTCCAGATCTTGTCAGAGAGAAGC ACAATCCAAATGACAATTCTGTTATAGTGATAATAGCCAAAGTTCTTAGACCATTGGTGCTCAGCATGATATTATGTGCTTCACATGCTCGGACATTTTC ACTGATTAACGGATATGCTGCTCCAATGGAGGTTTACAAGGTGTTAGATCACTACGATGAAGCAGGACCAGGTTCTGTTCTTTGTGTTGGAAGTGAATGG CACCGCTTTCCTTCTTCATTTTTCGTGCCTGACTATGTGGGTGAAGTCCGGTGGATCGATGACGGGTTTCGAGGTCTACTTCCTTTGCCATTCAATTCAT CGTTGGGAGGCACATCAGCTGCTCCTCCATATTTTAACAGCAAGAATAAGGCGTCAGATTTGCAATACATCCGAGATATCGAAGCTTGTGATTTCTTGGT AGAGCTGCAGCTTAATCGTCCTTATCCTTCTCGTGGAAGTGACTTGTCGAAATGGGAGCCTATAGCGGCATTGCCATACCTGGACAGGGAGTTGTCGCCT CCATTTTATCGTTCGTTCTTCATCCCATTCCTGTGGCAGGAGAAGAATGTGTTCGGAATGTATAAGTTGCTTAAAAGAGTACCAAAACAACATGCATAG
AA sequence Show only first row Show all	>Lus10028153 pacid=23166482 polypeptide=Lus10028153 locus=Lus10028153.g ID=Lus10028153.BGIv1.0 annot-version=v1.0 MSLTARQRRPDPSSTEATPEPYSKVDKPSRSSLNEDQQQLGWFMPVIALGLLRYMSATSNIIHDCDEFALRSYLYINLHELVGLPASWLFRDDKVRVFYA VRLFIGLISVIADATLVVALSRKYGKRLASYALAMLCLTSGCFFSSTSFLPSSFSMYAMSLSSGLFLLEKPALAVAVAAIGVLLGWPFSILAFLPITLFS LSKRFKISFFAGAVSSLSLIVLSVLVDHHYYRRWTSSVLNILMYNVAGGGESHLYGTEGPLFYLRNAFNNFNFCLVLALLLLVILPIVRRKYSPDLLIVV SPLYIWFLYPVYPLVCVAASAVIESFPDLVREKHNPNDNSVIVIIAKVLRPLVLSMILCASHARTFSLINGYAAPMEVYKVLDHYDEAGPGSVLCVGSEW HRFPSSFFVPDYVGEVRWIDDGFRGLLPLPFNSSLGGTSAAPPYFNSKNKASDLQYIRDIEACDFLVELQLNRPYPSRGSDLSKWEPIAALPYLDRELSP PFYRSFFIPFLWQEKNVFGMYKLLKRVPKQHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16900			Alg9-like mannosyltransferase ...		Lus10028153 [exp]	0	1
AT5G22120			unknown protein		Lus10008366 [exp]	3.9	0.8619
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	7.1	0.8904
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10028534 [exp]	9.2	0.8875
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Lus10028308 [exp]	9.3	0.8299
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10034886 [exp]	9.8	0.8616
AT1G47290		AT3BETAHSD/D1	3beta-hydroxysteroid-dehydroge...		Lus10000358 [exp]	10.4	0.8601
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10014628 [exp]	15.4	0.8224
AT3G57950			unknown protein		Lus10021036 [exp]	16.6	0.8554
AT1G10180			unknown protein		Lus10018297 [exp]	19.2	0.8701
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	20.7	0.8903

Compare expression of checked genes

Lus10028153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.