Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53300 666 / 0 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT2G42580 607 / 0 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G58620 567 / 0 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT3G14950 544 / 0 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT5G65160 293 / 3e-90 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT5G10090 278 / 2e-84 TPR13 tetratricopeptide repeat 13, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78120 256 / 1e-76 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12430 82 / 6e-16 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT1G04190 78 / 2e-15 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G33400 73 / 4e-13 TPR9 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042854 [exp] 1153 / 0 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10022500 [exp] 267 / 2e-80 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10016804 [exp] 254 / 2e-75 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10041189 [exp] 79 / 1e-15 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035117 [exp] 77 / 4e-15 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10021905 [exp] 74 / 6e-14 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031983 [exp] 76 / 7e-14 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10022603 [exp] 71 / 3e-12 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10031418 [exp] 68 / 1e-11 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G111500 [exp] 800 / 0 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.005G166300 [exp] 390 / 1e-125 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 314 / 7e-98 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G076800 [exp] 299 / 3e-92 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.001G392601 [exp] 286 / 3e-89 AT1G53300 260 / 1e-79 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.007G091200 [exp] 284 / 1e-86 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.012G045000 [exp] 84 / 3e-17 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.015G036000 [exp] 82 / 2e-16 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.001G255000 [exp] 79 / 6e-15 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.010G082900 [exp] 77 / 7e-15 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10028154 pacid=23166393 polypeptide=Lus10028154 locus=Lus10028154.g ID=Lus10028154.BGIv1.0 annot-version=v1.0 ATGTCGCAATCTGGGAAACCCATTGACGACCATAGCCATTTAAGAATGGTGGAGTCGGTAAGTGATCAGCTTCGCGACTCACTGAGTTCTTCTCTAGAGG CGAACAAGCCTGATTTCCGCGAACTCGATCTCGGTTCTCCTGTTTCTCCTCTGCGAGCCCGAGTGACCGCAGCCACCACCACCACCACCACCACTAGCTC TAGCTCGAGTTCTTCCGGATCTGTGTCTGGAACCCGGAATGGAGCAAACCCAGTTGCGAAAAAACTCAGCCATTCCGGCGAGATCTGCACTTCTAGTAGC GACACCAGTCCCACTACTTCTACGGGGCTGAAAACTCCTAGCAAGCCGACTTCTCAAGCTAGATCTGATCCCTTAATCTACTCCGGCAGTGGTGGGCATA GTTCGGTTAACTCTCCGCCAACGACCGTCCTCCCGACAGGGAACATCTGCCCCTCCGGTAAGATCATGAAAACTGGCTTGACGACAATGACGACTCGGAG CTCTAAGTCGGAGGTTTTGGGTTCAGGAAGTGGAAACTACGGCCACGGCAGCATAATGAGGGGCGGCGGCGGCAGTGGAGTCTCGAAATCTGCCGTCTTT GACAATGCTAGTAATTGCAGCAATAGCAGTGGCAGTCTTTTTCGAGGGAATGCTTATGTAGGGAGGGGGGGTTCAGGAGGTATCGTAGAACCAGAGGAAG TTAAGAGGGCAGCGAATGATATGTACAAAAAAGGTCATTTCAGTGAGGCATTGGCATTGTATGAGAAGGCCATTGCTTTATCACCATCCAATGCTGCCTA CCGGAGTAATCGGGCTGCTGCATTGATGAGTTTAGGCAGAGTTGCCGAGGCTGTCAGAGAGTGTGAGGAAGCAGTGAGGTTAGACCCTAACTATTCCAGG GCACATCAAAGGTTGGGATCTTTGTTCATCAGGTTAGGACAAGTGGAAAGTGCCAGGAAGCACCTCTGTCTACCTGGGCAGCCTCAAGATCCTTCTGAAT TGTCAAAGTTGCAAGTTGTGGAGAAGCATATCAATCGATGTTCTGAAGCTCGGAAGAGTAGCGACTGGAAGGGTGCATTGAGGGAATGTGATGCTGCTAT TCTTGCTGGTGCTGATTGTTCCCCTCTGCTCTTCATTTGTAAAGCTGAAGCCCATTTGAAGCTGCATAATCTTGACGATGCTGAATCGTGCCTGTTAAAT GGTCCGAGAATGGAGCATTATACCAGTTCCTGTCTACAGTCCAAAACTTTCGGGATGCATTGTGAAGCTTACTCTTTCTTAATCAAAGCACAAATTGAAA TGGCACTAGGAAGGTTTGATAGTGCAGTTACAGCTGCTGAGAGAGCTGCACAGATTGACCCACGAAATGTCGAAGTCGCGATTCTTCTTAAGAATGTGCG GTTGGTGTCGAGATCTCGTGCCCGCGGCAATGACCTCTTCAAATCTGAAAGGTTCACCGAGGCCTGCGCAGCTTATGGGGAAGGCCTGAAAGTCGATCCT TCAAACGCTGTTCTTTATTGCAACAGAGCAGCATGTTGGTATAAACTCGGAATGTGGGAAAGATCTGTTGAGGACTGCAACCAGGCGTTACGTATTCAGC CTAATTATATGAAAGCCCTCCTCCGGAGAGCTGCATCAAACAGTAAGCTAGACAGGTGGGGTGATGCTGTCCGGGATTACGAGGTTTTACGAAGGGAACT ACCTAATGATAGTGAAGTTGCAGAGTCTCTATTCCATGCTCAAGTTGCGCTAAAGAAATCTCGAGGAGAAGAAGTGTACAATATGAAGTTTGGTGGTGAA GTGGAGCAAGTATCAGGTCTGGAACAGTTCAGAGCGGCTGTATCAATGCCAGGTGTGTCTATAGTCCATTTCCTATCACCCTCTAATCTACAATGCAAGC AGATGTGTGCTTTTGTGGATGCTTTATGCAGTCGCTACCCATCCATAAATTTTTTCAAGGTGGACATTGAAGAGAATTCAGATGTTGCAAATACTGAGAA TGTGAGGATTGTACCTACATTCAAGATATACAAAGACGGCAGTCGAGTGAAGGAGATCATCTGCCCAACTCGTGATATATTGGAACATTCGGTGAGACAT TACAGTTTCTAG
AA sequence Show only first row Show all	>Lus10028154 pacid=23166393 polypeptide=Lus10028154 locus=Lus10028154.g ID=Lus10028154.BGIv1.0 annot-version=v1.0 MSQSGKPIDDHSHLRMVESVSDQLRDSLSSSLEANKPDFRELDLGSPVSPLRARVTAATTTTTTTSSSSSSSGSVSGTRNGANPVAKKLSHSGEICTSSS DTSPTTSTGLKTPSKPTSQARSDPLIYSGSGGHSSVNSPPTTVLPTGNICPSGKIMKTGLTTMTTRSSKSEVLGSGSGNYGHGSIMRGGGGSGVSKSAVF DNASNCSNSSGSLFRGNAYVGRGGSGGIVEPEEVKRAANDMYKKGHFSEALALYEKAIALSPSNAAYRSNRAAALMSLGRVAEAVRECEEAVRLDPNYSR AHQRLGSLFIRLGQVESARKHLCLPGQPQDPSELSKLQVVEKHINRCSEARKSSDWKGALRECDAAILAGADCSPLLFICKAEAHLKLHNLDDAESCLLN GPRMEHYTSSCLQSKTFGMHCEAYSFLIKAQIEMALGRFDSAVTAAERAAQIDPRNVEVAILLKNVRLVSRSRARGNDLFKSERFTEACAAYGEGLKVDP SNAVLYCNRAACWYKLGMWERSVEDCNQALRIQPNYMKALLRRAASNSKLDRWGDAVRDYEVLRRELPNDSEVAESLFHAQVALKKSRGEEVYNMKFGGE VEQVSGLEQFRAAVSMPGVSIVHFLSPSNLQCKQMCAFVDALCSRYPSINFFKVDIEENSDVANTENVRIVPTFKIYKDGSRVKEIICPTRDILEHSVRH YSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	0	1
AT2G16595			Translocon-associated protein ...		Lus10026282 [exp]	1.4	0.9003
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	1.7	0.9209
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10030155 [exp]	3.5	0.8827
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	5.7	0.8655
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	7.4	0.8713
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	8.9	0.8772
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10023563 [exp]	9.8	0.8695
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10006961 [exp]	11.5	0.8276
AT2G01480			O-fucosyltransferase family pr...		Lus10021790 [exp]	11.5	0.8596
AT4G32120			Galactosyltransferase family p...		Lus10001954 [exp]	12.1	0.8687

Compare expression of checked genes

Lus10028154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.