Lus10028156 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60240 967 / 0 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
AT2G24050 197 / 8e-52 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1)
AT5G57870 184 / 1e-47 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
AT1G62410 111 / 4e-27 MIF4G domain-containing protein (.1)
AT4G24800 54 / 2e-06 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3)
AT4G30680 52 / 2e-06 Initiation factor eIF-4 gamma, MA3 (.1)
AT5G63190 49 / 5e-05 MA3 domain-containing protein (.1.2)
AT1G22730 46 / 0.0003 MA3 domain-containing protein (.1)
AT3G48390 45 / 0.0004 MA3 domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042856 1070 / 0 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
Lus10035813 207 / 9e-57 AT5G57870 654 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Lus10022168 209 / 1e-55 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Lus10036594 207 / 2e-55 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Lus10010782 191 / 2e-49 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Lus10036256 89 / 4e-18 AT2G24050 145 / 3e-38 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Lus10010044 78 / 2e-15 ND /
Lus10012205 69 / 2e-11 AT1G22730 560 / 0.0 MA3 domain-containing protein (.1)
Lus10022417 62 / 2e-10 AT3G49210 68 / 1e-13 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G140200 1222 / 0 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
Potri.014G052600 1220 / 0 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
Potri.018G017600 199 / 2e-52 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Potri.018G104100 199 / 3e-52 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Potri.006G182100 197 / 1e-51 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Potri.006G265300 194 / 6e-51 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Potri.016G002100 81 / 7e-15 AT3G13300 714 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2)
Potri.015G088300 52 / 5e-06 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3)
Potri.005G199200 50 / 2e-05 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF02854 MIF4G MIF4G domain
CL0020 TPR PF02847 MA3 MA3 domain
Representative CDS sequence
>Lus10028156 pacid=23166415 polypeptide=Lus10028156 locus=Lus10028156.g ID=Lus10028156.BGIv1.0 annot-version=v1.0
ATGGATATTGAAGGAGGCGCAGAGGCTGTCCTGTCCAAACTCTCCCCTCGCAGTACTCGTTGCACTACTGATGGTGCTGTGGTAGCGGAGATTCTGGCAT
TTTTCGTCACGTGCCCGCGTCTGCAGGTAGTCCATCGTGCCGCCAACGGGATTGCCTATAAATTGACGAGACATGCTCTTTCATATCTCTCGGGTCGTGT
GGAGGGCGATCTCACAGCTCCCTATAATACCCACGCTCAATCTGGATCTCCAGATCGCGGGGCGGGGGGAGATCTGACGGCTGCAATTGCGTCCAACAAC
ATGCAGAAGTTGGATATCAAGCGAAGACTGAGCACAGTGATAAGAAAAAGGGGGATTCCTAAGCGTACGGATATATGTCCTTCAATCAATCTAGGTCCGA
TAGGAGCGACGCTCAGTTTCGGAAACAAGGCCGATCCGGCAGCTTTAATCAGCAGCGGAACTCCTCAGGCCCTCCTCACGGTAGAGGCGGCGGCCCCGCC
CCTTCACCGCCCTCTTCTTCTCTTCCTTCCAACCGCAGGTGGGCAATTTCGGCCAAACGCACCTGCAGCTAATTCTATTGATTATGCCAATGCTGTAGCA
TCCCATAATGTGCAGAATGGTGCCCGCGTACAGCCTCCATCACAAGGTCATTCTGATGCATCAGCTGCTAGTATGGTTGCTAAGCCTACTGAGGCGGCAG
CTCCACAGAGAAGTACCCGCCCAGTCCCAAAGGCTCCAACTTCTCACTCTTCCGCCATGACTGGTGATAATTCAACACTTGCTACGCCTGCCAAGGGTGA
TGCATCCAAGTCATTCCCATTCCAATTTGGGTCCATTAGCCCTGGTTTTATGAATGGGATGCAGATTCCAGCTCGAACAAGCTCAGCTCCTCCAAACTTG
GATGAGCAGAAACGTGACCAGGCACGCCATGATGCTCAAAGATCTGCTCCTGCAAGTCAGATTCCAAAGCAGTTACCGAAGAAGGATAGCGGCCCTGTGA
ACCAATCCAATACAAGGGAGTCTCAATCGGCTCCCAAGTCGAAGATAGACGCACAAGTCTTCCCTTCATCACCGCTCAACCAAACACATAAGCCTTCTGT
AATTCAGATGCCTATGAACACGATGCCAATGCCGTTTCCCCAGCCACAAGTATCTGTGCAGTTTGGTGGCCCAAACCCTCAATTACAGTCTCAGGGTATC
ACTGGAAATTCTCTTCAGGTTCCAATCCCCATACCATTAACAATGGGGAATGCTCCTCAGGTCCAACAGTCGATGTTTGTTCAAGGTCTTCAACACCATC
CAATGCAGACTCAAAACCTCATGCATCAAGGACAGGGCTTGGGTTTTACAACTCAAATGGGGCATCCATTGCCTCAGTTGGGAAACTTAGCTATGGGTAT
ATCCTCACAGTTTCAACAGCAACAAGGAGGCAAGTATGGCAGTGCACGGAAAACGACTGTAAAAATTACAGATCCCAAGACTCATGAGGAGTTGAGACTG
GATAAGCGGGCAGATGCATATGCAGATGGTGGAATGTCAGGCTTGAGGGGTCATCCTAACATGACTCCTCAATCCCAGCCAATACCATCTTATCCACCTA
CTCATACAATTAACTATTTCCCTAATTCTTATAATGCCAACAATCTGTATTATCACCCTCCAGGCTCTCTGCCGTTAACCAGTGGTCAGGTGCCCCCTGG
ATCTCAGGCACCTAGATTCAGCTATCCTGTGAATCAGGGCCCACAAAATGTGTCATTTGTCAACCCTTCTGCCACATCTTCCCAATCGGGCAGCAAATCT
GGACCTACAGTACATGGACATCCAGTCTCACAGAATTCTGAACATGCACCTGATGCTTCTATTTCTGTGAAACCCAAACTTTTTTCAAGCTCAACCACAG
CTAAAGCCGCGAATGCACTATCAGTAACAATAATCAAGGAACCAGCACCTGCTCTTGCTAGTGCTGATGCCAGGAGGAAGGAGAACCTTAGTTCCAACTC
TATTAAGGACAATCAGAAGAAGCTGGTTAAAAAAGGCTCCACCCAGCACCAGCATGAGGTTGAGGAGTTGACTTCTTCAGTTTCAAGTGCAGCAGCTTTG
GTATCCACTGATGGCATAACTGTTCTAAATGAAGAAGCCACGATTAGCAGCGTTGGAGGTGGTCCCAGTGCAGTCTTACTTGAAGCTTCTGGTACTGGAG
ATGTAGTAAACATTCCTAATGTCGCCAAGGTACAAGATTCTTCTTCGCTGTTGAAGTTTGAGACTCCAGCAGCAACAGAAGGAAAAGAAAAGGAATCAAA
AAATGTTGCTAACTCAGAGGAAAATAGCTCTGTGCTACCGTCAGCACCCGCTTTAAAGTATACCGACTGTGTGAATAAGACCCAAGAGGAATCTGTTTTG
GCTACAGATTCTGGCAAAGAGGTTCCTTCTGTAGGAAATGTGCAGAAACAGCAGGATGAACCAGTGACTTGCCAAGCAGAGAAAAGCAGGACAGCAGAGG
AAATAGATGTTACCTCATCCAGTAGTGGTGGTCCATCAGATTCTATGAAGTTGGATAGTGACGAAACCAAAACTAATATAGTGGGTGACAAAGGAATTTC
TGTCGCAGCTTCAAGTTTAGCAGATCAGCTGGCTACAGTTTGTACCCTTGATTCTGATTCTGGGTTGAAGCAAGAAGGTGAGGACAACACTGATGGTGAT
GTTTTGTCCTATGTACAATCTGGCTCCATGGACAAGTCTTATGAATTGAGTAGACCAAAGAGTAATGCTGGTAGAGGGAAGAAGAAGAGAAAAGAAATTC
TTCAAAAGGCAGATGCGGCTGGTACAACTGCTGACCTTTATATGGCTTATAAAGGGCCCGAAGATAAGAAAGAAACTGTCAGTTCTACCGAAAACACTAC
AGGCTTGCCTGATAGCTGCGGCTTGAAGGAAGCAACCTCTGTTGATGTTGGCTCTGGACCGAGTGATAAAGGTGCATCAAATAAGCATGAACCTGAAGAT
TGGGAAGATGCTGCTGACATCTCTACACCAAAGTTGGATAACATTGACGGTGGGAGGCTGGTACATGACAGTTTGTTGCAGGAGGATGAGGATATTCTTC
TGGACAAGAAATACTCGAGAGACTTTCTTCTGAAATTCTCTGAACAATGTACTGACCTTCCCGAGGGGTTTGAGATTACAGCAGATATAGCGGATGCCTT
GATGAGTTCGAATGCTGCACGTCTTGTTGAACGCGAATCATATCCTAGCGGTGGGAGGAGTGTGGATAGGTCAAACAGTGGATCAAGGATGGATCGGCGA
GGAGGTAACATGGGGGATGATGGCCGATGGAACAAGCAACCAGGTCATTTTGGTTCAGGGAGAGATCTACAAGTGGACATTGGGTATGCTGCAAATCTTG
GTTTCCGATCTGGTCAAGCTGGAAATTTTGGTGTGTTGAGGAATCCTCGACCGCAGGCTCCCATGCAGTTTGCTGGAGGAATATTATCTGGGCCAATGCA
ATCAGTGGGTGCTCAAGGTATGAATAGGAACAGCACTGATGGTGACAGGTGGCAGCGTGGAACCAATTTCCAGAAGGGATTGATTCCTTCCCCACAAACT
CCATTGCAGGTGATGCACAAGGCTGAGAGGAAGTATGAAGTTGGTAAAGTGACCGATGAAGAACAAGCCAAACAACGGCAATTGAAGGCCATTTTGAACA
AGCTGACACCTCAGAATTTTGAGAAGCTTTTTGAGCAAGTCAAAGCTGTTAACATTGATAATGCTGTTACACTAACAGGTGTGATTTCGCAGATTTTTGA
CAAAGCTTTGATGGAGCCAACCTTCTGTGAAATGTATGCCAACTTTTGCTATCATCTAGCTGGAGATTTGCCTGATTTCACCGAGGATAATGAAAAAATA
ACATTCAAGAGGTTGCTTCTGAACAAGTGTCAGGAAGAATTTGAGAGAGGAGAAAGAGAGCAAGAGGAAGCTGATAAAGCTGATGAGGAGGGTGAAACAA
AACTGTCTCCAGAGGCGAGAGAGGAAAAAAGGGTGAATGCTCGAAGAAGAATGCTTGGTAACATACGTCTGATAGGAGAGCTATACAAGAAGAAGATGTT
GACAGAGCGAATAATGCACGAGTGCATCAAAAAGTTGTTGGGCCAGTATCAAAACCCGGATGAGGAAGATGTTGAAGCATTATGTAAACTGATGAGCACG
ATCGGTGTAATGATTGATCATCCCAAAGCGAAAGAGCATATGGATGCTTATTTTGATAGGATGACAAAATTGTCAAATAACCCGAAACTTTCTTCTCGGG
TCAGATTCATGTTGAAGGATGCTATTGATCTTAGGAGGAACAAATGGCAGCAAAGAAGGAAGGTTGAAGGGCCAAAAAAGATTGATGAAGTCCACAGAGA
TGCTGCCCAAGAACGCCATCATCAGGGCGGAAGGGGATCTCGTAATCCTACAACTCCTGCAAGAAGAGGAACGATGGATTTTGGCCATAGAGGGTCATCT
ATGCTACCTTCTCCGAACTCGCATATGGGCGGTTTTCATGGTTTCCACAATGTGCGTGGACATCCCAGCCAGGATATTCGGTATAATGAGGACAGGCAGT
CTTATGAGGCAAGGACCTTATCGGTTCCCTTACCTCAACGAACTCTTGGTGAAGAATCCATTACTTTGGGTCCGCAGGGGGGGCTTGCTAGAGGAATGTC
AATTAGAGGGGGACATGCAATTGCAGCCACTCCTGTGATTGATATTGCTGCAGCACCAGGTGATTCTAGAAGAGGGGGACCTGGCTTGAATGGTTTTGGC
TCAAGGGAAGATGTTGCGCCGAGATATGTTTCTGATAGAATAAACAATGCTCCTGCTTTTTTTGATCAATCAGCTCTCCAAGATCGTAATGTGAATCTTG
TTAGGGATGGCCATGCTGCATCAATACCTTCCGAGTCACAGCCACCTTCTGCCAGCCAAAGTGTACCTTCAGGGAATGCTTTGTCCGAGGAACGCCTAAG
GGATATGTCAATCGGAGCAATTAAAGAATATTACAGTGCCCGAGATGAGAAAGAAGTAGCCCTATGCATCAAAGACATGAATTCTCCAGGGTTTCATCCT
TCAATGATCTCACTCTGGGTCACAGATTCATTTGAGAGGAAGGACATGGAGAGGGATCTATTAGCTAAGCTTATTGTAAGCCTTGCAAGGCCGCATGATG
CAACACTGACTGCCGGCCAGCTAGTTCAAGGGTTTCAAGAAGTGCTGAATACGTTAGATGATGCAGTGAATGATGCGCCAAGAGCTGCAGAATTCCTAGG
TCGCATATTCGGGCGAGCCGTGATGGAGAATGTGGTACAACTGAAGAAGTTTGGGGAGTTGTTACAGACAGCAGGGGCAGAGGAGCCAGGGCAGCTGCTG
GAGGCAGGTCTTGCTGGTGATGTTCTTGGGAGCACTCTGGAAATCATCAAAGAAGAGAAAGGAGAAACCGGATTGAACGAGGTTCAATCTGGTTCGGGGT
TACGGTTGGAGGATTTCATTCCTCCAAAGCCCTGCAGATCCAGGATACTAGAAAGATTTATTTAG
AA sequence
>Lus10028156 pacid=23166415 polypeptide=Lus10028156 locus=Lus10028156.g ID=Lus10028156.BGIv1.0 annot-version=v1.0
MDIEGGAEAVLSKLSPRSTRCTTDGAVVAEILAFFVTCPRLQVVHRAANGIAYKLTRHALSYLSGRVEGDLTAPYNTHAQSGSPDRGAGGDLTAAIASNN
MQKLDIKRRLSTVIRKRGIPKRTDICPSINLGPIGATLSFGNKADPAALISSGTPQALLTVEAAAPPLHRPLLLFLPTAGGQFRPNAPAANSIDYANAVA
SHNVQNGARVQPPSQGHSDASAASMVAKPTEAAAPQRSTRPVPKAPTSHSSAMTGDNSTLATPAKGDASKSFPFQFGSISPGFMNGMQIPARTSSAPPNL
DEQKRDQARHDAQRSAPASQIPKQLPKKDSGPVNQSNTRESQSAPKSKIDAQVFPSSPLNQTHKPSVIQMPMNTMPMPFPQPQVSVQFGGPNPQLQSQGI
TGNSLQVPIPIPLTMGNAPQVQQSMFVQGLQHHPMQTQNLMHQGQGLGFTTQMGHPLPQLGNLAMGISSQFQQQQGGKYGSARKTTVKITDPKTHEELRL
DKRADAYADGGMSGLRGHPNMTPQSQPIPSYPPTHTINYFPNSYNANNLYYHPPGSLPLTSGQVPPGSQAPRFSYPVNQGPQNVSFVNPSATSSQSGSKS
GPTVHGHPVSQNSEHAPDASISVKPKLFSSSTTAKAANALSVTIIKEPAPALASADARRKENLSSNSIKDNQKKLVKKGSTQHQHEVEELTSSVSSAAAL
VSTDGITVLNEEATISSVGGGPSAVLLEASGTGDVVNIPNVAKVQDSSSLLKFETPAATEGKEKESKNVANSEENSSVLPSAPALKYTDCVNKTQEESVL
ATDSGKEVPSVGNVQKQQDEPVTCQAEKSRTAEEIDVTSSSSGGPSDSMKLDSDETKTNIVGDKGISVAASSLADQLATVCTLDSDSGLKQEGEDNTDGD
VLSYVQSGSMDKSYELSRPKSNAGRGKKKRKEILQKADAAGTTADLYMAYKGPEDKKETVSSTENTTGLPDSCGLKEATSVDVGSGPSDKGASNKHEPED
WEDAADISTPKLDNIDGGRLVHDSLLQEDEDILLDKKYSRDFLLKFSEQCTDLPEGFEITADIADALMSSNAARLVERESYPSGGRSVDRSNSGSRMDRR
GGNMGDDGRWNKQPGHFGSGRDLQVDIGYAANLGFRSGQAGNFGVLRNPRPQAPMQFAGGILSGPMQSVGAQGMNRNSTDGDRWQRGTNFQKGLIPSPQT
PLQVMHKAERKYEVGKVTDEEQAKQRQLKAILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFDKALMEPTFCEMYANFCYHLAGDLPDFTEDNEKI
TFKRLLLNKCQEEFERGEREQEEADKADEEGETKLSPEAREEKRVNARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQNPDEEDVEALCKLMST
IGVMIDHPKAKEHMDAYFDRMTKLSNNPKLSSRVRFMLKDAIDLRRNKWQQRRKVEGPKKIDEVHRDAAQERHHQGGRGSRNPTTPARRGTMDFGHRGSS
MLPSPNSHMGGFHGFHNVRGHPSQDIRYNEDRQSYEARTLSVPLPQRTLGEESITLGPQGGLARGMSIRGGHAIAATPVIDIAAAPGDSRRGGPGLNGFG
SREDVAPRYVSDRINNAPAFFDQSALQDRNVNLVRDGHAASIPSESQPPSASQSVPSGNALSEERLRDMSIGAIKEYYSARDEKEVALCIKDMNSPGFHP
SMISLWVTDSFERKDMERDLLAKLIVSLARPHDATLTAGQLVQGFQEVLNTLDDAVNDAPRAAEFLGRIFGRAVMENVVQLKKFGELLQTAGAEEPGQLL
EAGLAGDVLGSTLEIIKEEKGETGLNEVQSGSGLRLEDFIPPKPCRSRILERFI

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G60240 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, ... Lus10028156 0 1
AT3G60240 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, ... Lus10042856 1.0 0.9832
AT2G47330 P-loop containing nucleoside t... Lus10011466 2.0 0.9279
AT2G46520 cellular apoptosis susceptibil... Lus10030241 2.4 0.9279
AT1G65440 GTB1 global transcription factor gr... Lus10003130 3.0 0.9155
AT1G73930 unknown protein Lus10032474 3.2 0.9120
AT5G18230 transcription regulator NOT2/N... Lus10002632 3.5 0.9244
AT5G65950 unknown protein Lus10037422 4.0 0.9319
AT3G45190 SIT4 phosphatase-associated fa... Lus10016088 5.0 0.9263
AT1G13980 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBR... Lus10030432 6.0 0.8997
AT1G01950 AtKINUb, ARK2 Arabidopsis thaliana KINESIN U... Lus10038007 6.3 0.8983

Lus10028156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.