Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17080 394 / 8e-132 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT2G35170 363 / 2e-120 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21920 289 / 2e-92 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77660 267 / 7e-84 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21980 102 / 1e-22 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G60890 99 / 1e-21 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT3G56960 98 / 4e-21 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 98 / 4e-21 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G77740 94 / 7e-20 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G10900 92 / 3e-19 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042858 [exp] 513 / 2e-178 AT4G17080 439 / 3e-150 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10028062 [exp] 282 / 2e-89 AT1G77660 442 / 2e-153 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10008325 [exp] 274 / 8e-86 AT1G77660 438 / 8e-152 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10018200 [exp] 107 / 5e-24 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 107 / 5e-24 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10029661 [exp] 106 / 6e-24 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10015456 [exp] 96 / 2e-20 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10001377 [exp] 96 / 3e-20 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10027306 [exp] 92 / 3e-19 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G140000 [exp] 479 / 7e-166 AT4G17080 373 / 1e-124 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.014G052300 [exp] 457 / 5e-157 AT4G17080 348 / 2e-115 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.003G085000 [exp] 412 / 1e-138 AT4G17080 417 / 5e-141 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.001G149400 [exp] 393 / 3e-131 AT4G17080 395 / 2e-132 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G085900 [exp] 286 / 3e-91 AT1G21920 396 / 7e-136 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.005G175800 [exp] 282 / 2e-89 AT1G21920 372 / 3e-126 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.005G172800 [exp] 100 / 4e-22 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 98 / 3e-21 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 98 / 4e-21 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G211200 [exp] 95 / 4e-20 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10028158 pacid=23166431 polypeptide=Lus10028158 locus=Lus10028158.g ID=Lus10028158.BGIv1.0 annot-version=v1.0 ATGCATCAGAAGAAATCAGAAGTCCAAATCGGAAAAGAAAGCAGCGGCGTCTCTTCCGATTTCAACCCTTCTCCTCCCCTCCTCCTCTTCCCCTTTCCTT CTCCTTCTTCCGATCACCACCGCAACCACAATCATCCACCACCGCCTCCTCCGCCACTTCCTCAGATTCTCGTCGAATTCTCCGCCGATATCCATCAACC GCCGAATGACCCAATCGCTCCTTCCCCTTCCTCCGCTTCTTCTGCATCTACGCCTTACAAACGCACCCTTTTGACTCACCACCACCACTCCTCCGCTGCT GCTGCTGCTGTTACCAATCCTCCGCCTCCTCCTCCGCTTCCTCGCCGTTCTTCCTCCTTGTCTAAATCGCCTACAATCTACCATTTCTCCCCGGCGTCTC CTCCCAATCACCACCACCTTCACCATCACCATCATCATAATCATCATCCTTTAGTTACCCTATCCATCGCTGCTAAATCCGCCGCCCTAAAATTCCTTCG CCGTTTCCGCCACCTCCGTCGTATCCGCGTCCATCTCCGACTCATCCTTCTCCTCTCCTTGCCCTTCTTTTACTTCCTCGTTTCCCAACCTAGCCACTCT TTCTTCCTCGACTTCTTCTCCGCCTTTGCCTTCTCTTCTGTTCTATTGTTCTCGCTCAATCTAGCACTCCCTCGCCTTCCTTCAATCCGCCTCTTCCTCT CCCGCTCTTTCCCAATCAAGCTCACTTCCTCCGCCTCTTCTAAGATTTCCAAATCGCCCTTGCCTGTGTTCTGGTCGATTGGTTCCCGGCCCAGATCCGA GAAAAGAGTCAAGAATTCCGGGTGCTGGGTTCAGGTTTACAGCAACGGGGACGTCTACGAAGGGGAATTCCACAAGGGAAGGTGCTCTGGTAGTGGGGTT TACTATTATTCCATGACTGGGAGGTACGAAGGGGATTGGGTTGATGGCAAATATGATGGCTATGGTGTGGAGACCTGGGCTAGAGGAAGCCGCTACAGAG GGCAGTACAGGCAAGGTGTTCGCCATGGATTTGGTGTTTATAGATTCTATACGGGAGATGTCTACGCTGGTGAATGGTCTAGTGGCCAGAGCCATGGTTG TGGAGTTCATACTTGCGAGGATGGTAGTAGATATGTTGGAGAATTCAAGTGGGGTGTTAAGCATGGTCTTGGCCACTACCATTTCAGAAATGGTGACACA TATGCTGGAGAGTATTTTTCGGACAAGATGCATGGATTTGGGGTCTACCGTTTTGCAAATGGGCATCGATACGAGGGAGCCTGGCATGAGGGTCGAAGGC AAGGCCTTGGAATGTATACATTCAGGAATGGGGAGACTCAATCAGGTCATTGGCAGAATGGCATTCTTGATGTTCCAAGCACTCAGAATACAACTCCCCC TGTTTCCCCTGTTGCTGTTTATCATTCTAAAGTGCTCAATGGTGTTCAGGAAGCACGAAGAGCTGCAGAAAAGGCTTACGATATGGGAAAGGTTGACGAG AGAGTGAATAGGGCAGTCACAGCAGCTAACAGAGCGGCCAATGCAGCTAGAGTAGCTGCTGTGAAGGCAGTGCAGAAACAAATGCATCCTAACCACCACC ACCTTGATAATTCCATTCCGGTTCCAATTCCTATTGTGTGA
AA sequence Show only first row Show all	>Lus10028158 pacid=23166431 polypeptide=Lus10028158 locus=Lus10028158.g ID=Lus10028158.BGIv1.0 annot-version=v1.0 MHQKKSEVQIGKESSGVSSDFNPSPPLLLFPFPSPSSDHHRNHNHPPPPPPPLPQILVEFSADIHQPPNDPIAPSPSSASSASTPYKRTLLTHHHHSSAA AAAVTNPPPPPPLPRRSSSLSKSPTIYHFSPASPPNHHHLHHHHHHNHHPLVTLSIAAKSAALKFLRRFRHLRRIRVHLRLILLLSLPFFYFLVSQPSHS FFLDFFSAFAFSSVLLFSLNLALPRLPSIRLFLSRSFPIKLTSSASSKISKSPLPVFWSIGSRPRSEKRVKNSGCWVQVYSNGDVYEGEFHKGRCSGSGV YYYSMTGRYEGDWVDGKYDGYGVETWARGSRYRGQYRQGVRHGFGVYRFYTGDVYAGEWSSGQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDT YAGEYFSDKMHGFGVYRFANGHRYEGAWHEGRRQGLGMYTFRNGETQSGHWQNGILDVPSTQNTTPPVSPVAVYHSKVLNGVQEARRAAEKAYDMGKVDE RVNRAVTAANRAANAARVAAVKAVQKQMHPNHHHLDNSIPVPIPIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17080			Histone H3 K4-specific methylt...		Lus10028158 [exp]	0	1
AT4G13530			unknown protein		Lus10041074 [exp]	4.7	0.8460
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	6.0	0.8372
AT3G54680			proteophosphoglycan-related (....		Lus10033654 [exp]	6.5	0.7668
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10013475 [exp]	6.6	0.8387
AT1G17080			Ribosomal protein L18ae family...		Lus10005580 [exp]	13.2	0.8181
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10037313 [exp]	13.7	0.7809
AT5G64550			loricrin-related (.1)		Lus10019307 [exp]	14.1	0.7926
AT4G09580			SNARE associated Golgi protein...		Lus10017913 [exp]	14.7	0.7840
AT1G27300			unknown protein		Lus10015771 [exp]	17.9	0.8102
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	18.4	0.8232

Compare expression of checked genes

Lus10028158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.