Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44680 417 / 2e-148 CKB4 casein kinase II beta subunit 4 (.1.2) AT5G47080 400 / 1e-141 CKB1 casein kinase II beta chain 1 (.1.2.3.4) AT4G17640 382 / 1e-134 CKB2 casein kinase II beta chain 2 (.1.2) AT3G60250 375 / 6e-132 CKB3 casein kinase II beta chain 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042861 [exp] 513 / 0 AT2G44680 447 / 2e-160 casein kinase II beta subunit 4 (.1.2) Lus10028161 [exp] 511 / 0 AT2G44680 454 / 5e-163 casein kinase II beta subunit 4 (.1.2) Lus10042859 [exp] 486 / 1e-175 AT2G44680 451 / 3e-162 casein kinase II beta subunit 4 (.1.2) Lus10028159 [exp] 485 / 3e-175 AT2G44680 449 / 2e-161 casein kinase II beta subunit 4 (.1.2) Lus10042860 [exp] 405 / 2e-144 AT5G47080 414 / 2e-148 casein kinase II beta chain 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052100 [exp] 456 / 2e-163 AT2G44680 423 / 1e-150 casein kinase II beta subunit 4 (.1.2) Potri.002G139900 [exp] 453 / 2e-162 AT2G44680 419 / 8e-149 casein kinase II beta subunit 4 (.1.2) Potri.001G149600 [exp] 378 / 5e-133 AT5G47080 390 / 7e-138 casein kinase II beta chain 1 (.1.2.3.4) Potri.003G084900 [exp] 365 / 8e-128 AT4G17640 377 / 7e-133 casein kinase II beta chain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01214 [flax] [poplar] CK_II_beta Casein kinase II regulatory subunit
Representative CDS sequence Show only first row Show all	>Lus10028160 pacid=23166470 polypeptide=Lus10028160 locus=Lus10028160.g ID=Lus10028160.BGIv1.0 annot-version=v1.0 ATGTATAGGGATCGAGGAGGATCGGGCATTGGTTCATCGCGGTCGGAGCTAGTCGGAGGAACTCTCGATAGGAAGCGCATCAACGATGCGCTCGACAAGC ATCTTGAGAAATCGTCCCCGTCAACTTCTAGGGGTTTGATTAGCAAAGACAAAGAGAGGCTTTCCGTACATCCCAATTCCGCTGACAAATTGCAGCTCGA TTCTCGCATGGCTTCTCATTCCAAGAACAAGTGCTCCGATGCAGAGGAATCTGAGACTGATAGCGAGGAGTCAGATGTTAGTGGTTCTGATGGGGAAGAC ACATCCTGGATCTCATGGTTCTGCAATCTGCGAGGAAATGAATTTTTCTGTGAAGTTGATGATGACTACATCCAGGATGATTTCAATCTTTGTGGATTGA GCAGTCAAGTCCCGTATTATGATTATGCACTTGATCTAATATTGGATGTGGAATCATCTCATGGTGATACATTCACTGAGGAGCAGAATGAGTTGGTGGA GTCAGCTGCAGAGATGCTGTATGGTTTAATTCATTTGCGTTATATACTCACTAGCAAGGGCTTGGCTGCTATGCTAGAGAAGTACAAGAACTACGACTTT GGGAGATGTCCCAGAGTTTATTGCTGTGGACAGCCCTGCCTTCCAGTAGGTCAATCCGACGTTCCTCGATCAAGCACTGTGAAAATCTATTGCCCGAAAT GCGAAGACATATATTACCCACGATCTAAGTACCAAGGCAACCTTGATGGAGCATACTTTGGGACAACATTTCCTCACCTATTTCTGATGACGTACGGTCA CTTGAAGCCACAGAAGGCAGCACAGAACTACGTACCAAGGGTGTTTGGCTTCAAACTCCACAAGTCTTGA
AA sequence Show only first row Show all	>Lus10028160 pacid=23166470 polypeptide=Lus10028160 locus=Lus10028160.g ID=Lus10028160.BGIv1.0 annot-version=v1.0 MYRDRGGSGIGSSRSELVGGTLDRKRINDALDKHLEKSSPSTSRGLISKDKERLSVHPNSADKLQLDSRMASHSKNKCSDAEESETDSEESDVSGSDGED TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEEQNELVESAAEMLYGLIHLRYILTSKGLAAMLEKYKNYDF GRCPRVYCCGQPCLPVGQSDVPRSSTVKIYCPKCEDIYYPRSKYQGNLDGAYFGTTFPHLFLMTYGHLKPQKAAQNYVPRVFGFKLHKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028160 [exp]	0	1
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	3.0	0.9027
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	9.7	0.8771
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10038695 [exp]	14.6	0.8786
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	15.1	0.8819
AT4G24820			26S proteasome, regulatory sub...		Lus10014916 [exp]	15.2	0.8783
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10017985 [exp]	16.5	0.8529
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10006878 [exp]	16.7	0.8230
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007409 [exp]	19.7	0.8750
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10042340 [exp]	22.8	0.8722
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031896 [exp]	23.1	0.8387

Compare expression of checked genes

Lus10028160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.