Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44680 420 / 1e-149 CKB4 casein kinase II beta subunit 4 (.1.2) AT5G47080 392 / 2e-138 CKB1 casein kinase II beta chain 1 (.1.2.3.4) AT4G17640 384 / 3e-135 CKB2 casein kinase II beta chain 2 (.1.2) AT3G60250 376 / 3e-132 CKB3 casein kinase II beta chain 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028160 [exp] 504 / 0 AT2G44680 455 / 2e-163 casein kinase II beta subunit 4 (.1.2) Lus10042861 [exp] 500 / 0 AT2G44680 447 / 2e-160 casein kinase II beta subunit 4 (.1.2) Lus10028159 [exp] 474 / 6e-171 AT2G44680 449 / 2e-161 casein kinase II beta subunit 4 (.1.2) Lus10042859 [exp] 473 / 9e-171 AT2G44680 451 / 3e-162 casein kinase II beta subunit 4 (.1.2) Lus10042860 [exp] 404 / 3e-144 AT5G47080 414 / 2e-148 casein kinase II beta chain 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052100 [exp] 451 / 1e-161 AT2G44680 423 / 1e-150 casein kinase II beta subunit 4 (.1.2) Potri.002G139900 [exp] 448 / 2e-160 AT2G44680 419 / 8e-149 casein kinase II beta subunit 4 (.1.2) Potri.001G149600 [exp] 379 / 2e-133 AT5G47080 390 / 7e-138 casein kinase II beta chain 1 (.1.2.3.4) Potri.003G084900 [exp] 368 / 6e-129 AT4G17640 377 / 7e-133 casein kinase II beta chain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01214 [flax] [poplar] CK_II_beta Casein kinase II regulatory subunit
Representative CDS sequence Show only first row Show all	>Lus10028161 pacid=23166544 polypeptide=Lus10028161 locus=Lus10028161.g ID=Lus10028161.BGIv1.0 annot-version=v1.0 ATGTATAGGGATCGAGGAGGATCGGGCATTGGTTCATCGCGGTCGGAGCTAGTCGGGGGAACTCTCGACCGGAAGCGCATCAACGATGCGCTCGACAAGC ATCTCGAGAAATCGTCCCCGTCGACTTCTAGGGGTTTGATCAGCAAGGACAAAGAGAGGCTTTCCGTATATCCCAATTCCGCTGACAAATTGCAGCTCGA TTCCCGCATGGCTTCTCATTCCAAGGACAAGTGCTCCGATGAGGAATCTGAGACTGATAGTGAGGAGTCAGATGTTAGTGGTTCTGATGCGGAAGACACA TCCTGGATTTCATGGTTCTGCAATCTGCGAGGAAATGAATTTTTCTGTGAAGTTGATGATGACTATATCCAGGATGATTTCAATCTTTGTGGATTGAGCA GCCAAGTCCCGTATTATGATTATGCACTTGATCTAATATTGGATGTGGAATCTTCTCATGGTGATACATTCACTGAGGAGCAGAATGAGTTGGTGGAGTC TGCTGCAGAGATGCTTTATGGTTTAATTCATTTGCGTTATATACTCACTAGCAAGGGCTTGGCTGCTATGCTAGAGAAGTACAAGAACTACGACTTTGGG AGATGCCCCAGAGTTTATTGCTGTGGACAGCCCTGCCTTCCAGTAGGCCAATCCGACGTTCCTCGATCAAGCACTGTGAAAATTTATTGCCCGAAATGCG AAGACATATATTACCCACGATCAAAGTACCAAGGCAACCTTGATGGAGCATACTTTGGGACAACATTTCCTCACCTATTTCTGATGACGTACGGCCACTT GAAGCCACAGAAGGCAGCACAGAATTATGTACCAAGAGTCTTCGGGTTCAAACTCCACAAGTCTTGA
AA sequence Show only first row Show all	>Lus10028161 pacid=23166544 polypeptide=Lus10028161 locus=Lus10028161.g ID=Lus10028161.BGIv1.0 annot-version=v1.0 MYRDRGGSGIGSSRSELVGGTLDRKRINDALDKHLEKSSPSTSRGLISKDKERLSVYPNSADKLQLDSRMASHSKDKCSDEESETDSEESDVSGSDAEDT SWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEEQNELVESAAEMLYGLIHLRYILTSKGLAAMLEKYKNYDFG RCPRVYCCGQPCLPVGQSDVPRSSTVKIYCPKCEDIYYPRSKYQGNLDGAYFGTTFPHLFLMTYGHLKPQKAAQNYVPRVFGFKLHKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	0	1
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	1.4	0.8831
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	2.0	0.8767
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	2.6	0.8439
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	3.9	0.8564
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	4.0	0.8620
AT1G12230			Aldolase superfamily protein (...		Lus10032243 [exp]	4.4	0.8007
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	4.6	0.8743
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	5.5	0.8549
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	7.3	0.8318
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	7.5	0.8115

Compare expression of checked genes

Lus10028161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.