Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44710 632 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G00830 127 / 9e-31 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G52660 114 / 1e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G13224 80 / 8e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G16380 81 / 1e-15 PAB6 poly(A) binding protein 6 (.1) AT4G34110 81 / 1e-15 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G47310 76 / 3e-14 flowering time control protein-related / FCA gamma-related (.1) AT4G16280 76 / 7e-14 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT1G71770 76 / 9e-14 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G36660 75 / 1e-13 PAB7 poly(A) binding protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012785 [exp] 323 / 7e-99 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033990 [exp] 317 / 2e-94 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10021351 [exp] 132 / 2e-32 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030207 [exp] 122 / 3e-29 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10043390 [exp] 121 / 5e-29 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 120 / 8e-29 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002689 [exp] 120 / 2e-28 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10017026 [exp] 86 / 2e-17 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10029574 [exp] 80 / 3e-15 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G139700 [exp] 755 / 0 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 751 / 0 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 356 / 1e-110 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G116400 [exp] 355 / 2e-110 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G212400 [exp] 143 / 4e-36 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 142 / 5e-36 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 136 / 6e-34 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 132 / 1e-32 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G104500 [exp] 120 / 1e-28 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G178200 [exp] 119 / 4e-28 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10028162 pacid=23166443 polypeptide=Lus10028162 locus=Lus10028162.g ID=Lus10028162.BGIv1.0 annot-version=v1.0 ATGCCTCCACGAGTCGTGAAGCGAGGAGCGGCGGCCGCTGCATCTAAGCGGGGTGGAAGAGCCACGCGAGGTGCCGGCAAGACCCAAACACCTCAGCCGG AAGATGTTTTGCGGAAGATAGAGGAAGGTACGATGGTCAACATGAAACCTGCTGTTGAAGAAGAGAAGCAGATGGTTACTGAGAAGCCAGTCGTTGAAGA AAAAGCGGTTCGTGAAGCCGATGATGAATCCAAATCGGATGTTAAGAGCTTGTCCTCGTCAAAAGACGGAGAAGAATTGAAGGAGTCTGTCGAGGATTTT GAAAAGGATGAAAGGTTGGAGCTGGATGATAACGAGCCTGAATATGAGCCCGAAGAATATGGCGATGATAAGGATCTTGAACAAGATGATGCTCAGGAGG AGGAGGAGGGTGATGGAGGGGATGAAGAGCTAGAGGAAGGAAATGAGGAGGAAGTGGATGAGGAAGAGGCTGATCTGGTAGAGGAGGAATTGGAAGAGGT TCCTGAAGATGTTGAGGTTGAAGAGGAAGATGAGCAAACCAGTAATGATCATGCTGAGCTGGCTGATGCAACTGAAGAGGATGAGCACCATGAGGTTTTT AAGGAGAGGCGCAAGCGCAAGGAGTTTGAAGTCTTCGTTGGCGGTCTGGATAAAGATGCCACTGAATCTGATCTTCGGAAAGTTTTTGGCCGTGTTGGTG AGATTACTGAAGTTCGACTATTGAAGAATCCACATACCAAGAAAAACAAAGGGTTTGCATTCTTGCGTTTTGCTTCAGTTGAACAAGCTCAAAGGGCCAT AACTGAGTTGAAGAATCCAGTGATTAATGGGAAACAGTGTGGTGTTAGTCGTAGTCAAGACAGTGACACCCTTTTCTTGGGTAACATTTGCAAAACATGG ACAAAAGAAGCTTTGAAAGAGAAATTGAAACATTATGGAGTTGATAATGTTGAGGAAGTGACCCTCGTTGAAGATGGTAACAGTGAAGGAATGAACCGAG GGTTTGCCTTTCTAGAATTCTCGTGTCGTACAGAAGCCATGGATGCTTTTAAGCGTCTACAGAAGAGAGATGTTTTATTTGGAGTTGATAGGCCAGCAAA GGTCTCTCTTTCTGATGCCTTCATTGATCCCAGGGATGAGATAATGGCTCAGGTTAAGACTATATTTATCGATGGTCTTCCTTCATCATGGGATGAGAAC CATGTTCGAGAGCTATTGAAGATGTATGGAAAAATTGAGAAGGTTGAACTTGCCAGAAATATGCCATCGGCCAACAGAAAAGATTTTGGTTTTGTTACCT TTGACAGTCATGAAGCTGCTGTAACCTGTGCTAAAAGTATTAATAATGAAGATCTTGGTGAAGGAGAAAACAAGGCTAAAGTTAGGGCTCGGCTGTCAAG GCCTCTTCAGAGAGGAAAAGGGAAAACTTTTAGCCGTAGAGATGTTCGTCCCGGGCGGGGTAATGGTACAGTCAGCAGGGGTACATGGCCTCGGTCCACT GCACGAAGCCTTCCATCTCGTACGATAAGAACTACTGGAAATCGAGCCCTGCCAGCTAGCGTAAAGAGGCCTGTGCGTTTGAGAGAACGTCATGCTCCTC CAATGTCTCCTCGAATAAGAAGCAGACCTTTGGCTCCTCCTCCCCGGTCTTACGATAGAAGAGCACCTGTTCCAGCATATCCGAAGAGTAGCTTGAAAAG GGACTATTCTCGACGTGATGAATTGCCACCTCTAAGAAGCCGTGCTCCCATTGATTATGGTCCCAGGACTGTTCCAGAGAGACGCCAATCCTATAGAGAT GAGTACTCTTCCCGTGGTGCTGGGTACCCTGATCTTCCTAGGGGCAATTCTCGTGGATCTGCCAGAAGAGATTATGTGGATGATCCTTATCCTCAGAGAT TTGAAAGGCCCGATCCAAGTTACCGTGAAGGGCGTGCCCGTGACTATGACCCTTTCTCAGGTTCCAAACGTCCATATGCCATGATGGATGACATCCCTCC GCGTTATGCTGAATCTAGTGCTCGTCATTCAAGGGCTCGTGTAGAGTATGAACTTCCTCCTAGGTCTTCCCACTATGGAGATGGCTACGGTGATAGTCGA CTTGGGAGATCAAATTTTGGAAATGGGGGCAGCAGAAATACCATGTCCAGTCAGGATTCACATGGAATGTATGGGGAGCGTCATGGTATGGCTTATGGAG GTTCATACGGGAGCAACGACGGTGGTGGAGTGTACCCTACGAATTATGATGGTGATTACGTATCACGCGGAAGTGATGTTGGGGGTAGTTCTTACTCATC AATATACTCGAGTCGTGGAATGGGTGGCAGCAGTTACATGGGTTCAGGTGGTTCAAGATCATACTACTGA
AA sequence Show only first row Show all	>Lus10028162 pacid=23166443 polypeptide=Lus10028162 locus=Lus10028162.g ID=Lus10028162.BGIv1.0 annot-version=v1.0 MPPRVVKRGAAAAASKRGGRATRGAGKTQTPQPEDVLRKIEEGTMVNMKPAVEEEKQMVTEKPVVEEKAVREADDESKSDVKSLSSSKDGEELKESVEDF EKDERLELDDNEPEYEPEEYGDDKDLEQDDAQEEEEGDGGDEELEEGNEEEVDEEEADLVEEELEEVPEDVEVEEEDEQTSNDHAELADATEEDEHHEVF KERRKRKEFEVFVGGLDKDATESDLRKVFGRVGEITEVRLLKNPHTKKNKGFAFLRFASVEQAQRAITELKNPVINGKQCGVSRSQDSDTLFLGNICKTW TKEALKEKLKHYGVDNVEEVTLVEDGNSEGMNRGFAFLEFSCRTEAMDAFKRLQKRDVLFGVDRPAKVSLSDAFIDPRDEIMAQVKTIFIDGLPSSWDEN HVRELLKMYGKIEKVELARNMPSANRKDFGFVTFDSHEAAVTCAKSINNEDLGEGENKAKVRARLSRPLQRGKGKTFSRRDVRPGRGNGTVSRGTWPRST ARSLPSRTIRTTGNRALPASVKRPVRLRERHAPPMSPRIRSRPLAPPPRSYDRRAPVPAYPKSSLKRDYSRRDELPPLRSRAPIDYGPRTVPERRQSYRD EYSSRGAGYPDLPRGNSRGSARRDYVDDPYPQRFERPDPSYREGRARDYDPFSGSKRPYAMMDDIPPRYAESSARHSRARVEYELPPRSSHYGDGYGDSR LGRSNFGNGGSRNTMSSQDSHGMYGERHGMAYGGSYGSNDGGGVYPTNYDGDYVSRGSDVGGSSYSSIYSSRGMGGSSYMGSGGSRSYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10028162 [exp]	0	1
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10037821 [exp]	5.9	0.8158
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	15.4	0.8140
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	16.7	0.7798
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	17.3	0.7862
AT2G25970			KH domain-containing protein (...		Lus10004445 [exp]	18.0	0.7773
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	18.2	0.7804
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	20.5	0.8036
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	20.6	0.7977
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	20.6	0.8121
AT3G26990			ENTH/VHS family protein (.1)		Lus10005665 [exp]	27.5	0.7583

Compare expression of checked genes

Lus10028162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.