Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27540 252 / 1e-84 PRA1.H prenylated RAB acceptor 1.H (.1) AT1G04260 41 / 0.0002 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042863 [exp] 407 / 1e-145 AT4G27540 265 / 8e-90 prenylated RAB acceptor 1.H (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G396900 [exp] 284 / 2e-97 AT4G27540 256 / 2e-86 prenylated RAB acceptor 1.H (.1) Potri.011G116200 [exp] 268 / 4e-91 AT4G27540 268 / 3e-91 prenylated RAB acceptor 1.H (.1) Potri.002G044000 [exp] 40 / 0.0004 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10028164 pacid=23166454 polypeptide=Lus10028164 locus=Lus10028164.g ID=Lus10028164.BGIv1.0 annot-version=v1.0 ATGGTGTTCTCGGCTAACCCCTTATCCGCAAGCGTTCCAGACGCAGCCTTCGAGTCCTGGCTCCGCGACTCCGGCTACCTCGAGCTAATTGACCAGCACT CTTACTCCTCGTCTTCCGCGCCCACCAGCACTTCCTCTTCCGCCGCCGCCGCCAGCTCTAATAACAATGTCGTCGCCGCTGCTGCCTCCTGTTCTGAGAC CTCCATAACCGGTGGAATTTTCGACTCCTTGTTTTCGGAAATCCTCATTCTTCTCTCCGTCTTCACTATCAATCCTTTCTCCAAGCTCGCTCCCCAGGAT TTTTCCGTTGCGACCCCTTCCTGGACCTCCGCCTTCATCGGGGACTGCAGTTCTTACTCCCTTCCTGGCGGCTCCGATCAGGCCAGACTCAGGCTTCAAG AGAATGTTAAGCGTTACGCCAAAAACTATGCAACTCTCTTCGTCACCTTCTTCGCCTGTACTCTGTACCAAATGCCACTAGCTCTCATTGGGTTAATATC ATGTTTGGGTGTTTGGGAGATGTTCAGGTTTTCTAATGAAAGATGGGGATGGGATAGGCACCCTCTTTTTCAGCAGGTTTTGGTCCGCACTGCTCAATGT GCGACTATAGGTATTCTGATAATGCTGAACGTTCCAAAGGCTCTCATTTGTGCGATTGCTGTGAGTTATGCAGTAACGATTTTGCACGCATCCTTCCGGA AACTTACTTCGCCAAGGCCGCCTCCCAGGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10028164 pacid=23166454 polypeptide=Lus10028164 locus=Lus10028164.g ID=Lus10028164.BGIv1.0 annot-version=v1.0 MVFSANPLSASVPDAAFESWLRDSGYLELIDQHSYSSSSAPTSTSSSAAAASSNNNVVAAAASCSETSITGGIFDSLFSEILILLSVFTINPFSKLAPQD FSVATPSWTSAFIGDCSSYSLPGGSDQARLRLQENVKRYAKNYATLFVTFFACTLYQMPLALIGLISCLGVWEMFRFSNERWGWDRHPLFQQVLVRTAQC ATIGILIMLNVPKALICAIAVSYAVTILHASFRKLTSPRPPPRKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Lus10028164 [exp]	0	1
AT5G17560			BolA-like family protein (.1)		Lus10009527 [exp]	12.4	0.7173
AT5G17510			unknown protein		Lus10024979 [exp]	14.9	0.6895
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	18.3	0.7068
AT2G26110			Protein of unknown function (D...		Lus10019517 [exp]	19.6	0.7067
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10003504 [exp]	20.5	0.6580
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10024413 [exp]	29.8	0.6805
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10037330 [exp]	33.9	0.6912
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009568 [exp]	36.5	0.6587
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	37.5	0.6858
AT5G59845			Gibberellin-regulated family p...		Lus10001407 [exp]	37.9	0.6361

Compare expression of checked genes

Lus10028164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.