Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24480 92 / 5e-20 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042868 [exp] 473 / 2e-160 AT4G24480 988 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111200 [exp] 159 / 8e-43 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.005G153100 [exp] 142 / 3e-37 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028168 pacid=23166556 polypeptide=Lus10028168 locus=Lus10028168.g ID=Lus10028168.BGIv1.0 annot-version=v1.0 ATGCCTCACAGAACGACTTACGTCTTCCCGAGGCAATTCCCGGATCAGCCCTGTCCTTTCGGCGCGTCGTCGTCGAAGAAGCTGTTGGATCACGAGAAGA AGCCGAAAGCGTCACCCGAAGAGAGTGAAAAAGATGGGAGGGGGCTCCACCGAAAGTCTTCGGACTCTCTCACTGTTGGCGGCCCAAACTCACCAGCAGT GAAAGCGACACCGTTTCTAACCACCTCTTCGCCGCTCGCCGATCTCTTTACCACCAGCGATGACGAGAAGTATCACCGGAAGGAAAAATACCATGGCGTC GAGGAAGAGAAGCTCCGGAAGAAGAAGAAGAAGCAACAAGCCGCTTTCTGCGACTGGTTGGCTGAGAAAAAGATAGAGAGGTCCAAATCCGGTCATGTGA AATTGAAAAGCAGATTGTCCAGGAGTGATTATGACGACGATGATGTACCCGACGGTCAGCGGTGTACTATGGCGGTCGCATCACCGGACCCGGAGCCTGA GCCTAAAGTTCCGATACCGGAGAAAGTAACCGAAGAGGTTTTTGGTGTCAAGTTGAGGAGCAGATTGTCGACTGATCATGACGACGAAGAGACTGAGCAC TTGCTGCAGGCGGCGCCGGAATCAGAGATGAGGGTTCCGGAGATAGTCATAAAGGATCACAGAGATGCTGACCGGGACTTTGACCGGCAGGTTTCGCTGC CGCGATTTTCCAGCGGGAGCAGTTATGCTGGGAGCTTGTTCTCCGGGACTACGCTCGATGGAACTTTCACGCTCTCCAGCGATCTCAAGGACACAACCAC CACCGCCTCTGCTGCGGCGGTGCAGAAGTTGAGGCAGGATGCTGTGGCGCAAGAAGTGGCGGAGGAGGTGGAGAGAAGTGTGAAGAACTTGGCGCAGAAG GCGAAAGAGAGTTATTGTCTGCAGCTTGGTTTGGCTAGGAGGCTGAGTTCGCAAGCTGGTATTTCGAGCCAGCTCTTGCTATTGAAGGAAGGTGTGGATG AGATTCCTGATGTTGAGGCGGTCTCTTACAGGCTCTGGGTAAACCAATCGTTTCCCTCCTATTGTTAG
AA sequence Show only first row Show all	>Lus10028168 pacid=23166556 polypeptide=Lus10028168 locus=Lus10028168.g ID=Lus10028168.BGIv1.0 annot-version=v1.0 MPHRTTYVFPRQFPDQPCPFGASSSKKLLDHEKKPKASPEESEKDGRGLHRKSSDSLTVGGPNSPAVKATPFLTTSSPLADLFTTSDDEKYHRKEKYHGV EEEKLRKKKKKQQAAFCDWLAEKKIERSKSGHVKLKSRLSRSDYDDDDVPDGQRCTMAVASPDPEPEPKVPIPEKVTEEVFGVKLRSRLSTDHDDEETEH LLQAAPESEMRVPEIVIKDHRDADRDFDRQVSLPRFSSGSSYAGSLFSGTTLDGTFTLSSDLKDTTTTASAAAVQKLRQDAVAQEVAEEVERSVKNLAQK AKESYCLQLGLARRLSSQAGISSQLLLLKEGVDEIPDVEAVSYRLWVNQSFPSYC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24480			Protein kinase superfamily pro...		Lus10028168 [exp]	0	1
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10008139 [exp]	13.1	0.7280
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	18.5	0.7599
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10028917 [exp]	20.2	0.7274
AT5G40450			unknown protein		Lus10022266 [exp]	21.4	0.7515
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	30.5	0.7106
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	31.9	0.7070
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	34.1	0.7037
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	36.5	0.7446
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	57.5	0.6941
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	65.3	0.6919

Compare expression of checked genes

Lus10028168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.