Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24480 801 / 0 Protein kinase superfamily protein (.1) AT5G03730 496 / 3e-167 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT1G73660 329 / 4e-101 protein tyrosine kinase family protein (.1) AT1G18160 327 / 1e-100 Protein kinase superfamily protein (.1) AT5G11850 321 / 3e-99 Protein kinase superfamily protein (.1) AT1G08720 312 / 1e-95 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G49470 287 / 2e-90 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 286 / 4e-87 PAS domain-containing protein tyrosine kinase family protein (.1) AT4G23050 285 / 5e-87 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06630 281 / 3e-86 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042868 [exp] 1170 / 0 AT4G24480 988 / 0.0 Protein kinase superfamily protein (.1) Lus10023865 [exp] 497 / 5e-167 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10034154 [exp] 368 / 4e-119 AT5G03730 618 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 352 / 5e-111 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10031341 [exp] 328 / 4e-102 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10043428 [exp] 328 / 4e-102 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10027247 [exp] 329 / 2e-101 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10000937 [exp] 318 / 3e-98 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 318 / 4e-98 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G153100 [exp] 865 / 0 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.002G111200 [exp] 860 / 0 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.006G115800 [exp] 508 / 1e-171 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.016G095750 [exp] 506 / 1e-170 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.008G025800 [exp] 416 / 6e-138 AT5G03730 670 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.012G048400 [exp] 328 / 1e-100 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.015G040100 [exp] 328 / 2e-100 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.013G034800 [exp] 321 / 2e-98 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 319 / 5e-98 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 318 / 2e-97 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10028169 pacid=23166423 polypeptide=Lus10028169 locus=Lus10028169.g ID=Lus10028169.BGIv1.0 annot-version=v1.0 ATGAATCCGTATCTTTGGGTTATGTGCAACGACGAGGATGAAGGGAAAAAGCTGCCGTCTCTTATGGCGCTAAGAGAAATTGATCCTAGTAATACTACGA TGGAGGTGGTTCTTGTGGATAAGCGTGCTGATTCACGTCTTAGGGAGCTCGAGGATAAAGCTCAAGAGCTTTTTTCTGCCTCGGAAAATACGTTGGTGTT AGTGGAGAAGTTGGGTAAACTTGTTGCTATTTGCATGGGGGGAAATTTTCCAATGGAGCAGGGTGATCTGCAGCAGCGTTGGAAAATGGTTAGTGGAAGA TTAAGGAAATTCCACAAGTGCATTGTTCTACCGATTGGCAACCTATCCATGGGACTTTGCAGGCATCGTGCTATTCTTTTTAAGAAATTGGCGGATTATA TAGGCTTGCCATGTCGTATAGCTCGAGGCTGCAAGTACTGTGTAGCAGATCACAGGTCTTCTTGCCTAGTCAAAATCGAGGATGACAGACAGTTTTCACG GGAGTTTGTAGTTGATCTTGTTGGACAGCCAGGAAACATCCATGGTCCTGATTCAACAATCAATGGAGGATTCACTTCTTCAATGCCATCGCCATTTCAG ATTTCTCATCTAAGAGAATACCAGCACCCATACACGGATGATATGTCATCTCAACTTGTGGGCTCAAGGAAGTTGGGGGCAAATGAAGAAAGCCAGAAAG CTTTTGAAATGACACATGTTTGCGGTTTCAATGGAGTGGAAAGAACTTGCGTTGAAATAAAATCTTCAGTGATGCGCTTAGATTTGGATGCGAAAGCTGA AGCTTTCGATGCAGCTAGACTTGGCCAAAAGCGCTTGATATCCCATACAAATATAAACCTTTTGATGGAGTCAGAAGTCAAACAAGTGCAAAGCGAGCCT GATACCAGAGGCAGAATGTCAACTATCACGGATCCAAAGTTTTTGAACCTGGAGCCTTCACTTGCAATGGACTGGCTTGAGATTTCATGGGATGAACTTC ATATTAAAGAGCGTATTGGTGCTGGCTCATTTGGGACAGTGCATCGTGCTGAATGGCATGGATCGGTTTCAATCATGAAACGTGTCCGACATCCAAATGT GGTTCTGTTCATGGGTGCTGTCACAAAGCGTCCTCATCTATCTATAGTAACAGAGTACCTACCAAGGGGTAGTCTGTACCGTCTTATACACAGGCCAGCT GCAGGGGAAGTGATGGACCAAAGGAGACGGTTAAGAATGGCACTGGATGTGGCAAAAGGCGTCAATTATCTGCATTGTCTTAACCCTCCAATTGTCCACT GGGACCTGAAATCTCCAAATTTGTTGGTCGATAAAAATTGGACGGTCAAGGTGTGTGATTTTGGGCTGTCTAGATTCAAAGCCAGCACTTACATACCATC AAAATCAGTAGCTGGAACGCCGGAGTGGATGGCTCCAGAGTTCCTTCGTGGAGAGCCTTCAAATGAGAAATCTGACGTTTACAGTTTTGGAGTCATATTG TGGGAGCTTGTAACCATGCAACAGCCTTGGAATGGACTTGGTCCCGCCCAGGTGGTTGGAGCAGTAGCCTTCCAAAACCGAAGGCTTTCTATCCCACCGA AAACTTCTCCTTTGTTAGTTTCTCTTATGGAAGCTTGTTGGGCAGACGATGCTGCTCAAAGGCCGACGTTCCGAAGCATAGTTGATTCATTGAAGAAGTT GCTAAAGTCCCCAGAGAAGTTGATACATATGGGAGAGGCAGGGGAGTAG
AA sequence Show only first row Show all	>Lus10028169 pacid=23166423 polypeptide=Lus10028169 locus=Lus10028169.g ID=Lus10028169.BGIv1.0 annot-version=v1.0 MNPYLWVMCNDEDEGKKLPSLMALREIDPSNTTMEVVLVDKRADSRLRELEDKAQELFSASENTLVLVEKLGKLVAICMGGNFPMEQGDLQQRWKMVSGR LRKFHKCIVLPIGNLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDRQFSREFVVDLVGQPGNIHGPDSTINGGFTSSMPSPFQ ISHLREYQHPYTDDMSSQLVGSRKLGANEESQKAFEMTHVCGFNGVERTCVEIKSSVMRLDLDAKAEAFDAARLGQKRLISHTNINLLMESEVKQVQSEP DTRGRMSTITDPKFLNLEPSLAMDWLEISWDELHIKERIGAGSFGTVHRAEWHGSVSIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPA AGEVMDQRRRLRMALDVAKGVNYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKASTYIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVIL WELVTMQQPWNGLGPAQVVGAVAFQNRRLSIPPKTSPLLVSLMEACWADDAAQRPTFRSIVDSLKKLLKSPEKLIHMGEAGE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24480			Protein kinase superfamily pro...		Lus10028169 [exp]	0	1
AT1G09195			unknown protein		Lus10031400 [exp]	3.3	0.9304
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	9.5	0.8982
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	13.0	0.9104
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	15.2	0.9106
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	16.9	0.9198
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	17.9	0.9162
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	26.7	0.9111
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036536 [exp]	32.8	0.9084
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	33.9	0.9048
AT1G08920		ESL1	ERD (early response to dehydra...		Lus10033814 [exp]	35.9	0.8906

Compare expression of checked genes

Lus10028169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.