Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57380 213 / 6e-62 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT4G30200 200 / 2e-57 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT3G24440 186 / 3e-52 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT2G18880 180 / 1e-50 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT2G18870 55 / 2e-08 VIL4, VEL3 VIN3-like 4, vernalization5/VIN3-like 3, vernalization5/VIN3-like (.1) AT3G63500 55 / 7e-08 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT5G48160 52 / 4e-07 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT1G14740 47 / 3e-05 Protein of unknown function (DUF1423) (.1) AT3G07780 45 / 7e-05 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042869 [exp] 734 / 0 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10038260 [exp] 183 / 2e-50 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10019394 [exp] 167 / 2e-45 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019393 [exp] 166 / 2e-45 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043251 [exp] 139 / 3e-35 AT3G24440 432 / 8e-145 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043250 [exp] 135 / 3e-35 AT3G24440 226 / 3e-68 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10025841 [exp] 107 / 2e-24 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10012327 [exp] 52 / 6e-07 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 52 / 7e-07 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111600 [exp] 396 / 2e-133 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) Potri.006G167800 [exp] 247 / 7e-74 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G091500 [exp] 245 / 8e-73 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G076500 [exp] 174 / 3e-47 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G158676 [exp] 170 / 5e-46 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.002G221500 [exp] 52 / 9e-07 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 51 / 1e-06 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.009G059000 [exp] 49 / 7e-06 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.001G264100 [exp] 49 / 1e-05 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.008G138100 [exp] 47 / 2e-05 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10028170 pacid=23166476 polypeptide=Lus10028170 locus=Lus10028170.g ID=Lus10028170.BGIv1.0 annot-version=v1.0 ATGGCGTCCGGTGTTGTTGACCCAGAGCAATGCAGTAAACTAAGCTTTGAAGAGAAAAGGGACCTGGCTTGCAAAATTGCTGGATGGGCCAACAACGATG CATGTGAGACTCTTAGTTCTTCATTCACGCGCAAGGAGCTTCGTCAGATCATATGTGCAGAGATGGGTAAAGAGAGGAAATATGCAGGATACAATAAGTC TCGGATGATCAACCAACTTCTAAAGGTGGTTTCTTCCAAAAATGATGGTGCCCCTGCTGGAAAAAGGTTAAAGACGAAAAGGCTGAATGAATGTGAAAGA GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAGGGAATCCATGATTCTGTGGGGGTGAATGAGAAAGAACAAGTTCGAGTTTGCCGAA ATGCTGCATGTCGGGCCACTTTATCTTCTGATGATGCTTTCTGCAAGAGATGTTCTTGCTGTATCTGTCATTCTTACGATGAAAACAAGGATCCCAGTCT GTGGTTAACCTGCGCTTCTTCTTTTTGTGGGCTTACTTGCCATCTGATATGTGCCATGAAGGATTCAAGGTCTGGAATCGTCAAGACTGGTTCTTGTACA AAGTTGGAAGGATGTTTCTACTGTGTTGCTTGTGGAGAAGTCAATGAACTAATGAGAATCTGGAGAAAGCAACTTGTGGTGGCCATGGAGGTTAGAAGAG TAGATGTGTTGTGTCTGCGAGTGCTTCTGGGTCAAAAGATTCTCTCTGGAACTGAACAATACTATGGCATCCATGAGATGCTAGAAAGTGGTGTTCAAAT GTTGCAAAACGAAGTGGGACCTCTCGATCTCGTGTGCACAAAGATGGCACGGGGTATTGTCAAGAGGCTCTCTTGTGGTGCTCAGGTTCAGAAGATGTGC GCCTCTGCACTTGAAGCTTTTGATTCTAAATACTCTGCTGATTGTAGCAGAGATTTTAAACAGAAGGAAGAATCAAATGGCACTAACAAGAAGCGCAAAT ACAAAGACGTGGACTGCTCACCACCACCTATAGAAGAATCTGTTATTGCAGTGACGAACCAGGGGTCATTTTCGCCATCAACACCGTGCAAGTCTAACGA AACGCAGGAGGAGGATGTTTCTGGTACGGTGGGATGGAAAAGAAGAGAAGAAGAAAGCAGTTACGAATACTCAGTAAGGGTGATAAAATGGCTAGAGGAA CAAGGGGAGATAGAGGAAGCTTTTAGAGTGAGGTTACTGACTTGGTTTAGCCTCAAAGCATCAGATCAAGAGAGGAGGGTGGTCAATGCTTTCGTCGACA CCTTGGTTGACCACCCACCAAGCTTAGCCCAGCAGCTTAAGCACTCGTTTCTGGACGAGATTACTCGCGAGTCAAGAAATACGGTTGCTGCTCAACATGG TCGTCTCTGCTTCTGCGCTTGTAGGTTACATTAA
AA sequence Show only first row Show all	>Lus10028170 pacid=23166476 polypeptide=Lus10028170 locus=Lus10028170.g ID=Lus10028170.BGIv1.0 annot-version=v1.0 MASGVVDPEQCSKLSFEEKRDLACKIAGWANNDACETLSSSFTRKELRQIICAEMGKERKYAGYNKSRMINQLLKVVSSKNDGAPAGKRLKTKRLNECER EEEEEEEEEEEKEEEGIHDSVGVNEKEQVRVCRNAACRATLSSDDAFCKRCSCCICHSYDENKDPSLWLTCASSFCGLTCHLICAMKDSRSGIVKTGSCT KLEGCFYCVACGEVNELMRIWRKQLVVAMEVRRVDVLCLRVLLGQKILSGTEQYYGIHEMLESGVQMLQNEVGPLDLVCTKMARGIVKRLSCGAQVQKMC ASALEAFDSKYSADCSRDFKQKEESNGTNKKRKYKDVDCSPPPIEESVIAVTNQGSFSPSTPCKSNETQEEDVSGTVGWKRREEESSYEYSVRVIKWLEE QGEIEEAFRVRLLTWFSLKASDQERRVVNAFVDTLVDHPPSLAQQLKHSFLDEITRESRNTVAAQHGRLCFCACRLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57380		VIN3	VERNALIZATION INSENSITIVE 3, F...		Lus10028170 [exp]	0	1
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011576 [exp]	1.4	0.7960
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	8.9	0.7871
AT4G38980			unknown protein		Lus10031089 [exp]	11.2	0.7718
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	15.2	0.7868
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	19.0	0.7581
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	20.1	0.7516
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	20.2	0.7490
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10009963 [exp]	22.5	0.7749
AT3G26750			unknown protein		Lus10021459 [exp]	27.5	0.7055
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10023743 [exp]	27.5	0.7564

Compare expression of checked genes

Lus10028170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.