Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24510 264 / 5e-84 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT3G23840 235 / 4e-73 HXXXD-type acyl-transferase family protein (.1) AT4G13840 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) AT3G48720 66 / 1e-11 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT3G30280 64 / 7e-11 HXXXD-type acyl-transferase family protein (.1) AT5G48930 63 / 2e-10 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT4G29250 62 / 2e-10 HXXXD-type acyl-transferase family protein (.1) AT4G15390 62 / 4e-10 HXXXD-type acyl-transferase family protein (.1) AT5G41040 62 / 5e-10 HXXXD-type acyl-transferase family protein (.1.2) AT5G23970 61 / 5e-10 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042870 [exp] 649 / 0 AT4G24510 254 / 2e-80 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Lus10016638 [exp] 236 / 9e-73 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1) Lus10010786 [exp] 71 / 5e-13 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10028335 [exp] 70 / 1e-12 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10036078 [exp] 70 / 1e-12 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10026237 [exp] 69 / 3e-12 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 67 / 7e-12 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10023806 [exp] 67 / 9e-12 AT1G31490 511 / 3e-180 HXXXD-type acyl-transferase family protein (.1) Lus10026123 [exp] 66 / 2e-11 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G153600 [exp] 341 / 5e-114 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.001G319200 [exp] 243 / 1e-75 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.005G052200 [exp] 79 / 1e-15 AT4G29250 207 / 9e-62 HXXXD-type acyl-transferase family protein (.1) Potri.018G105500 [exp] 76 / 9e-15 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.013G039700 [exp] 76 / 2e-14 AT4G29250 218 / 2e-65 HXXXD-type acyl-transferase family protein (.1) Potri.018G104700 [exp] 73 / 1e-13 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 72 / 3e-13 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G032700 [exp] 71 / 5e-13 AT4G29250 437 / 5e-151 HXXXD-type acyl-transferase family protein (.1) Potri.001G042900 [exp] 69 / 1e-12 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.004G017600 [exp] 68 / 3e-12 AT3G26040 257 / 4e-81 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10028171 pacid=23166499 polypeptide=Lus10028171 locus=Lus10028171.g ID=Lus10028171.BGIv1.0 annot-version=v1.0 ATGGTATCCTCCACTACTCCGGCGCCGCTAGCGTCCGCCGCCAGGCTGTCGACAGTGGTTCCTGCATCTGTCACCGGAGAAAACAAAAAGGAGTGGGCGC TGTCGGGGGTTGACCTGGCCATGAAGCTCCACTACATAAAGGCCGTATACTTCTTCAGCAAGGAGGCCGCAAGTGATTTTACCATTTTGGACCTCAAGGC GCCCATGTTCCCCTGGCTATCCCACTACTACCCTGCTTCCGGCAGGATACGCAGGCCTGACGACCAAGACGACCGCCGTGGTGGGACGCGGCCCTTCATC AACTGCAACGACAGCGGGGTGAGGATCGGAGAAGCTCATTGCGCAAATTGGACGGTGGAAGAATGGCTCTGCCGCCCGCCGGCCCAAGCGGAGGAGGATG ATGGTTTTCTGACGTCGTTTGATCATGTTCTTGGCCCTGATCTAGGATTTTCTCCGCTCGTTTATCTCCAGTTCACTTGGTTCAAGTGTGGCGGTCTTTC AGTGGGCCTAAGTTGGGCTCACGTGCTTGGCGATCCATTCACGGCCTCCACATTCATCAACACTTGGGCCCAACTACTCAAAGGCCATTCCGTAATTCCC GACGGGCTGGATCCTCATCGGCCCAACTCCTTCCCAATTCAATCTCCCACCAAAAACAAGATCCCTTCATTCATAAAACGGGTCGAGCCGGTCGGCGATT GTTGGCGCTCTCCTCCTTGCTACGCAAAGATTCAAACTCACACCTTCCACCTGACCTCAGAGCAATTAAATAGAGTCAAATCCAGAGTCGCCTCCTCCAA AATCTCAAATTTCGATATTCTGTCAGCGATCATATGGAAATCGCTATCAAAACTCAGGAAAGTAAGTACCGTAACGATCTGTTGGAACAAATTTCCCGCG GCTTGTCCACGGTTGGGGAACAAGATGGCGGTGGGGGCGATTCATGCCGATTTCGGTACTGTAGAAAAGAGCGAGGTGTGCGAATTGGCGGAATTAATTA CCGCAGGGAAAAAAGAAGACGAAAGCGAGCTGATTGAGGAGAATGTAAATTTCGACTGTATAATGTACGGAACGAACTTGACGTTTGTGAACATGGAAGA GGCTGAGATTTATGGTGTGGAGATGAAGGGGCGGAAGGCGATACATGCAGAGTACAAAATCGAGGGAGTCGGGGAAGAAGGGTGTGTGTTGGTGATGAAA GAGAAAGAAGGTGGAATGGCGGTGACCGTTATGTTACCGGGAAAAGAAGTGGCGGAGCTGAAAGAGGAGATGAGGAAGAAGTGGGGTATTGTGTGA
AA sequence Show only first row Show all	>Lus10028171 pacid=23166499 polypeptide=Lus10028171 locus=Lus10028171.g ID=Lus10028171.BGIv1.0 annot-version=v1.0 MVSSTTPAPLASAARLSTVVPASVTGENKKEWALSGVDLAMKLHYIKAVYFFSKEAASDFTILDLKAPMFPWLSHYYPASGRIRRPDDQDDRRGGTRPFI NCNDSGVRIGEAHCANWTVEEWLCRPPAQAEEDDGFLTSFDHVLGPDLGFSPLVYLQFTWFKCGGLSVGLSWAHVLGDPFTASTFINTWAQLLKGHSVIP DGLDPHRPNSFPIQSPTKNKIPSFIKRVEPVGDCWRSPPCYAKIQTHTFHLTSEQLNRVKSRVASSKISNFDILSAIIWKSLSKLRKVSTVTICWNKFPA ACPRLGNKMAVGAIHADFGTVEKSEVCELAELITAGKKEDESELIEENVNFDCIMYGTNLTFVNMEEAEIYGVEMKGRKAIHAEYKIEGVGEEGCVLVMK EKEGGMAVTVMLPGKEVAELKEEMRKKWGIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10028171 [exp]	0	1
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10012670 [exp]	2.4	0.9471
AT2G10940			Bifunctional inhibitor/lipid-t...		Lus10027704 [exp]	4.0	0.9467
AT3G12880			Plant invertase/pectin methyle...		Lus10031197 [exp]	11.3	0.9665
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	12.3	0.9231
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10025085 [exp]	12.5	0.9205
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031276 [exp]	14.7	0.8857
AT1G70250			receptor serine/threonine kina...		Lus10032228 [exp]	14.7	0.8836
AT5G46930			Plant invertase/pectin methyle...		Lus10040119 [exp]	17.3	0.9379
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	18.1	0.9651
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10017708 [exp]	21.4	0.9348

Compare expression of checked genes

Lus10028171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.