Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58220 165 / 1e-43 MYB Homeodomain-like superfamily protein (.1) AT1G09710 160 / 2e-42 MYB Homeodomain-like superfamily protein (.1.2) AT4G26930 43 / 0.0004 MYB ATMYB97 myb domain protein 97 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042871 [exp] 824 / 0 AT1G58220 213 / 3e-60 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106500 [exp] 273 / 7e-84 AT1G09710 228 / 1e-65 Homeodomain-like superfamily protein (.1.2) Potri.003G189700 [exp] 48 / 1e-05 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 43 / 0.0006 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028172 pacid=23166392 polypeptide=Lus10028172 locus=Lus10028172.g ID=Lus10028172.BGIv1.0 annot-version=v1.0 ATGGTCGATAAAACGAAGAAGAGCGGCAAGCAGAAAAGGGGGCGGATCAGTGAAGAGGATATCTTCTGCGTCTTGCAAAGGTATACGGCTACGACAGTTT TGGCATTGTTGCACGAAGTAGGTCAATTTGAAGGAGCAAAGATTGATTGGAATGCCATTATGAAGAAGACTTCAACTGGGATTACTAGTGCCAGGGAGTA CCAAATGCTATGGAGGCATTTGGCCTATCGAGATTCCTTGTTGGATAAACTGAATGATAACGATCAGTTGCTGGACGACGACAGTGACTTGGAGTATGAA TTGGAAGCATGCCCTGAAGTTAGTGGTGAGGTTTCGGCTGAGGCAGCAGCAAGTGTAAAGGTGTTGATGGCTTGTGCTTTACCAAATGACACCAATAAAC ACACAGGAGAAACTGTTGAGGCTTCATTGATCCGTTCAACGACAGAAAATTTGCAACTTTCTGCAGTTCAGAAGCAACAGTTGGCTATAGTCATTGATTC AGAAGGCAAAGATGGTGATGGAACTCAAAATCAATCCAAAAAGAAGAGAAAAACATGGTCCGATGCAAAGGATCTAGAATTGATTGCTGCAGTACGGAAG TTTGGCGAGGGCAATTGGACCAGTATAGTAAAAAGCGGCATCATGGGAGATAGTACTACTTCACAACTATCTCAGAGATGGGCCAACATTCGAAAGAAGA ACAACTTAAATTTTGGAACTAATCCAAGAAACTCACAACTATCCGAGGCGCAACAGGCAGCTCGCCATGCAGTGAATATGGCTCTTGATCCCCCGACTAG GAACACATTTATAAATCGCACAGGTATACCTCCTAAACAGGAGCCTCAAAAGCGGCAAGCTATCACAAGGTTCTCGATAATGGGAACTATGGGTACAGCA AGTAAGGGAGCGAATTTAGCTTCAGATCCTGTAAGAGCTGCTGCAGTTTTTGCCGGGGCTCGTATTGTAAGCCAGTCAGACGCTGCTTCACTCCTCAAGT CGTCTCAGGGAAATAATGTCGTCCACCACATTATGCCAAAAGGCAGTCCCTCGATAAGGACACCGTTGCTTTCCGGTGCATCATCCACTCACCAGGAGAC TCGTCCTAAGGTTCACCATCCATCTACTGGAGCAGCAGCAGCAGCAGCAACTAGTGCACCGCTTTCCCCTCCATCAATGGTGCAGGGTCCTCGTCCTACA TTAAGCCAGCCGAAGAAGATCTCACCTGTTCAACACAGTTGTTCTGAACCTCTGGAGAACAAGCGAGATGCTAAAACTGTAGATGGTTGCCGTGTTGAGC AAGTTGTGAATGATAAAACAGCAAAGGGTGTGAAATCCTCGGAAGGTAATAATGGTAAGATGCTAGTTGCTGAAAACTCAAAGGAGACTGTTGAGAATAG CAAGGGGGGTCCGCTGAATACAAAACCTGAAGGGACTCTGGAAGAGAATGATAATGGTGACTGTAAAGAGGAGGACGAGAAGAGAGTAACCAAGCAGCAA AGTGATGATGGCGGTGGCAGTGAAATGGTGGTGACTGTGAATAAAGGAGAAGAAGCTGATAATAATTAA
AA sequence Show only first row Show all	>Lus10028172 pacid=23166392 polypeptide=Lus10028172 locus=Lus10028172.g ID=Lus10028172.BGIv1.0 annot-version=v1.0 MVDKTKKSGKQKRGRISEEDIFCVLQRYTATTVLALLHEVGQFEGAKIDWNAIMKKTSTGITSAREYQMLWRHLAYRDSLLDKLNDNDQLLDDDSDLEYE LEACPEVSGEVSAEAAASVKVLMACALPNDTNKHTGETVEASLIRSTTENLQLSAVQKQQLAIVIDSEGKDGDGTQNQSKKKRKTWSDAKDLELIAAVRK FGEGNWTSIVKSGIMGDSTTSQLSQRWANIRKKNNLNFGTNPRNSQLSEAQQAARHAVNMALDPPTRNTFINRTGIPPKQEPQKRQAITRFSIMGTMGTA SKGANLASDPVRAAAVFAGARIVSQSDAASLLKSSQGNNVVHHIMPKGSPSIRTPLLSGASSTHQETRPKVHHPSTGAAAAAATSAPLSPPSMVQGPRPT LSQPKKISPVQHSCSEPLENKRDAKTVDGCRVEQVVNDKTAKGVKSSEGNNGKMLVAENSKETVENSKGGPLNTKPEGTLEENDNGDCKEEDEKRVTKQQ SDDGGGSEMVVTVNKGEEADNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	0	1
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	4.9	0.7517
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	10.1	0.7568
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033254 [exp]	13.4	0.7180
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	13.9	0.7268
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10017342 [exp]	16.0	0.7585
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	18.4	0.7760
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	20.1	0.7749
AT3G19080			SWIB complex BAF60b domain-con...		Lus10019640 [exp]	26.8	0.7464
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	29.7	0.7445
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10037279 [exp]	30.7	0.6841

Compare expression of checked genes

Lus10028172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.