Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02040 115 / 1e-28 C2H2ZnF C2H2-type zinc finger family protein (.1) AT4G35280 101 / 6e-24 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G17180 94 / 1e-21 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT3G19580 86 / 2e-18 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT2G45120 84 / 1e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G67450 81 / 5e-17 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT3G60580 81 / 8e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G10470 78 / 2e-15 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04340 76 / 2e-15 C2H2ZnF ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) AT1G02030 76 / 3e-15 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042872 [exp] 597 / 0 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10009775 [exp] 315 / 3e-102 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10024763 [exp] 300 / 1e-96 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 87 / 5e-18 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10014631 [exp] 83 / 1e-17 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1) Lus10023912 [exp] 82 / 2e-17 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10015740 [exp] 83 / 5e-17 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10033798 [exp] 80 / 1e-16 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10003463 [exp] 81 / 2e-16 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066200 [exp] 318 / 4e-104 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 318 / 5e-104 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.009G166200 [exp] 113 / 6e-28 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.004G205300 [exp] 113 / 7e-28 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.002G119300 [exp] 93 / 4e-21 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.014G017300 [exp] 83 / 8e-18 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.002G143800 [exp] 84 / 2e-17 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.001G295500 [exp] 79 / 2e-16 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.006G121600 [exp] 79 / 2e-16 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.009G089400 [exp] 77 / 1e-15 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028173 pacid=23166517 polypeptide=Lus10028173 locus=Lus10028173.g ID=Lus10028173.BGIv1.0 annot-version=v1.0 ATGGCACTAATAATCGTGGATCAAGAATCGGAGTCGAAGCAATACTTGTGTAAGATTTGCAAGAAAGGATTCGGGTGCGGGAGAGCACTAGGCGGGCATA TGAGAGCTCATGGAATACGTTATGATGATCATAGTTTCGATTATGATCACATGGACACGGAAGAAGAAGAGGAGGGGGATGATCATACGAGCGATTGGGA AGACAACGACGTTGTTGCTCCTACAAATAACAATGATAAGACATTGTACGGATTGCGCACGAACCCTAATCGGCTAAAAACCACACGCGTATGCGAGAAT TGCGACAAGGAGTTCCTGTCGTGGAAATCATTCCTCGAGCACAAAGCCGCAAACAAATGCACCTCCTCCAACGATGCCGATTCAGTCGTCTCCAGTGCCA ATCATCAAGACTACTCCACCATTAACATGAGAAACACCGGTTGGTCCAAAAGGAAGAGGTCCATGAGAGCCAAGGTTATATCAACCGAGGAAGAAGATTT GGCCAACTGCCTCATGTTGCTATCCAATGCCGGAAACACAATGATCGTCAATATTGACCAGCCCGAAGAATCGTGTGCTTCCGCGAGTAGAGACGATCAT GATCATCGTGATAAATTAAGGACTACGACGACGATGATTCAAATGATAATCCCTCCTTCACCTCCCAACAACAAGACGGCCAAACTAGGTAACAACAATA ACACTAACAAAGGGGTGTTCGAGTGCAAAGCATGTAAGAAAGTGTTCAACTCTCACCAGGCGCTCGGCGGACACAGAGCAAGTCACAAGAAAGTGAAAGG CTGTTTCGCTGCCGCGGCCGATGATGATGTCATCACCGTACAGCATGACAACACATTCTTCCTCCCCAAGTTTCATCCTGGGTCGGTCAACAACAAGAGG AAACTGTCGAGCAAAGTACACGAGTGCTCCATTTGCCACCGGGTATTTTCTTCGGGTCAAGCACTTGGTGGCCACAAACGGTGCCACTGGATCACCTCTA ATAATAATAATAATTCTTCTTCCACGGCAGCAAAGTTGATCCATCTAGAGAAAAGTCAACAAATTATTATTAGACGTAATAATAATTTGATTAGAAATAC TACTAGCGAGAACTCCGTTGATCTCTCGCTGGAACTTAACCTCCATTCTTCTCCTCCGACGACCAACGTCGTTTGCGTTGACTATTCTTCTGGCCATTTG AAGAACAAGAAGAAGAATGAAAACGGCAGCGCTCGGTCGATGGTCGACGACGAGGCGGAGAGTAAGGTGAAGTTGGCGAAGCTTAGTGAGCTAAAGGACA TCAATGTAAGTAATGGGAATTCGTCCCCATGGCTGCAAGTAGGAATTGGCGCCTCTGCTGCTCACCGCCTCTGA
AA sequence Show only first row Show all	>Lus10028173 pacid=23166517 polypeptide=Lus10028173 locus=Lus10028173.g ID=Lus10028173.BGIv1.0 annot-version=v1.0 MALIIVDQESESKQYLCKICKKGFGCGRALGGHMRAHGIRYDDHSFDYDHMDTEEEEEGDDHTSDWEDNDVVAPTNNNDKTLYGLRTNPNRLKTTRVCEN CDKEFLSWKSFLEHKAANKCTSSNDADSVVSSANHQDYSTINMRNTGWSKRKRSMRAKVISTEEEDLANCLMLLSNAGNTMIVNIDQPEESCASASRDDH DHRDKLRTTTTMIQMIIPPSPPNNKTAKLGNNNNTNKGVFECKACKKVFNSHQALGGHRASHKKVKGCFAAAADDDVITVQHDNTFFLPKFHPGSVNNKR KLSSKVHECSICHRVFSSGQALGGHKRCHWITSNNNNNSSSTAAKLIHLEKSQQIIIRRNNNLIRNTTSENSVDLSLELNLHSSPPTTNVVCVDYSSGHL KNKKKNENGSARSMVDDEAESKVKLAKLSELKDINVSNGNSSPWLQVGIGASAAHRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	2.2	0.9642
					Lus10037270 [exp]	2.8	0.9400
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	5.1	0.9246
AT3G01430			unknown protein		Lus10014527 [exp]	7.7	0.9563
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	11.5	0.9456
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	11.6	0.9397
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10024038 [exp]	11.8	0.9370
AT5G14890			NHL domain-containing protein ...		Lus10032160 [exp]	12.7	0.9206
AT5G49525			unknown protein		Lus10017078 [exp]	13.4	0.9376
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10041711 [exp]	15.9	0.9345

Compare expression of checked genes

Lus10028173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.