Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45080 249 / 1e-84 CYCP3;1 cyclin p3;1 (.1) AT3G60550 248 / 4e-84 CYCP3;2 cyclin p3;2 (.1) AT5G61650 142 / 1e-42 CYCP4;2 CYCLIN P4;2 (.1) AT5G07450 141 / 2e-42 CYCP4;3 cyclin p4;3 (.1) AT2G44740 141 / 2e-42 CYCP4;1 cyclin p4;1 (.1) AT3G63120 131 / 2e-38 CYCP1;1 cyclin p1;1 (.1) AT3G21870 129 / 1e-37 CYCP2;1 cyclin p2;1 (.1) AT3G05327 106 / 1e-28 Cyclin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042873 [exp] 375 / 1e-134 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10022038 [exp] 147 / 1e-44 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10042582 [exp] 139 / 2e-41 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10043003 [exp] 137 / 3e-40 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10032505 [exp] 135 / 1e-39 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10027148 [exp] 135 / 2e-39 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10039697 [exp] 134 / 2e-39 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10004475 [exp] 128 / 4e-37 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10029933 [exp] 124 / 2e-35 AT3G05327 172 / 3e-54 Cyclin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143400 [exp] 273 / 6e-94 AT2G45080 324 / 1e-113 cyclin p3;1 (.1) Potri.014G066400 [exp] 260 / 6e-89 AT3G60550 343 / 3e-121 cyclin p3;2 (.1) Potri.007G121500 [exp] 149 / 2e-45 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.014G050400 [exp] 146 / 2e-44 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.015G112140 [exp] 144 / 9e-44 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.012G114600 [exp] 141 / 4e-42 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.002G052800 [exp] 134 / 4e-39 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.013G023000 [exp] 132 / 4e-39 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G209800 [exp] 131 / 3e-38 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.005G033600 [exp] 126 / 9e-37 AT3G05327 184 / 5e-59 Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF08613 [flax] [poplar] Cyclin Cyclin
Representative CDS sequence Show only first row Show all	>Lus10028174 pacid=23166435 polypeptide=Lus10028174 locus=Lus10028174.g ID=Lus10028174.BGIv1.0 annot-version=v1.0 ATGGCCCGTAACCAGAGAATCCTAGAAAGGAACTCTTCAGTAACCGCCGCCGCCCGACCGATTAGAACCGGCCAGGTGTTCGATTCCTCCATGGTACCGG ACCTGACAATCCAATCCTACCTGGAGCGGATCTACCGCTACACCCGGGCCGGACCCTCCGTCTACGTGGTCGCCTACGTCTACATCGACAGATTCTGCCA AGCAAATCCCGGATTCATCATCACCTCCCGAAATGTTCATCGCCTCCTCATTACCACCATCGTCCTCGCCTCCAAATACGTTGAGGACATGAATTACAAG AACTCGTATTTGGCGAGGGTGGGAGGGATAACGACTGGGGAACTGAACAAGATGGAGGTGGATTTTCTGTTCATGATGGGATTCAAGATGCATGTGAATC TGAGCGTGTTCGAGAGCTATTGCTGCCATTTGGAGAGGGAAGTAAGCGTCGGCGGCGGGTATCAGATTGAGAAAACTCTGCGCTACTGTGCTCAAGATAT CAAGTCCGGACAAATTCGTCGTCGTGATAGATTTAGTCTCCAGATTTCTCCACGGATTATGTTGTAG
AA sequence Show only first row Show all	>Lus10028174 pacid=23166435 polypeptide=Lus10028174 locus=Lus10028174.g ID=Lus10028174.BGIv1.0 annot-version=v1.0 MARNQRILERNSSVTAAARPIRTGQVFDSSMVPDLTIQSYLERIYRYTRAGPSVYVVAYVYIDRFCQANPGFIITSRNVHRLLITTIVLASKYVEDMNYK NSYLARVGGITTGELNKMEVDFLFMMGFKMHVNLSVFESYCCHLEREVSVGGGYQIEKTLRYCAQDIKSGQIRRRDRFSLQISPRIML

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	1.7	0.9057
AT4G24972		TPD1	tapetum determinant 1 (.1)		Lus10016744 [exp]	2.2	0.8769
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	2.8	0.8926
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	3.0	0.8906
AT4G19390			Uncharacterised protein family...		Lus10018793 [exp]	6.2	0.8533
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	8.4	0.8722
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	8.5	0.8773
AT3G50140			Plant protein of unknown funct...		Lus10037762 [exp]	8.7	0.8592
AT4G27610			unknown protein		Lus10043458 [exp]	9.4	0.8692
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10042672 [exp]	9.8	0.8600

Compare expression of checked genes

Lus10028174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.