Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00050 161 / 1e-44 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20180 94 / 1e-20 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT5G67110 86 / 3e-19 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G09530 85 / 2e-17 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT4G36930 83 / 4e-17 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G61270 81 / 7e-17 bHLH PIF7, bHLH072 phytochrome-interacting factor7 (.1.2) AT4G28815 81 / 1e-16 bHLH bHLH127 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G28790 81 / 1e-16 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G28800 78 / 3e-15 bHLH bHLH056 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G59060 77 / 6e-15 bHLH PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042874 [exp] 104 / 2e-26 AT4G00050 68 / 6e-14 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015734 [exp] 100 / 6e-23 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003471 [exp] 99 / 2e-22 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024811 [exp] 91 / 8e-20 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022833 [exp] 92 / 2e-19 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10011899 [exp] 91 / 3e-19 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10029805 [exp] 90 / 7e-19 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10020727 [exp] 89 / 2e-18 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10041592 [exp] 77 / 7e-16 AT4G36930 106 / 3e-28 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066500 [exp] 207 / 3e-61 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G143300 [exp] 175 / 4e-49 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G252800 [exp] 89 / 9e-19 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.005G139700 [exp] 87 / 2e-18 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G055400 [exp] 87 / 5e-18 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.005G207200 [exp] 87 / 6e-18 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.005G001800 [exp] 85 / 2e-17 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.014G111400 [exp] 85 / 2e-17 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.013G001300 [exp] 85 / 3e-17 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G124400 [exp] 82 / 5e-17 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028175 pacid=23166386 polypeptide=Lus10028175 locus=Lus10028175.g ID=Lus10028175.BGIv1.0 annot-version=v1.0 ATGGACGCTCTGGTCCCTTGCTCCAACGTTGTCCCTACTACAACTAATGTTCCTCAAGATCATCATCGGACCAAGGCTCAACGGGTTATGGAGTTGGCGG CTCCGGTAGCGGGGATGGTCGGCTCTGCACGGGTCGGGTCGTGCAGCGGGCCGGTCGGGGTGTTGGAGAACGGGAGGCGTGGAGGAGGGAAAGTGGCGGC GCGTCCGGAGTGGAGTGGGAGGGACCAGAGCGCGTGTGGGAGCGCGAGCTTGGGGAGGGATAGCCAGCGAGTGACGCTGGATACGTGCGAGAGGGATGGT GGGGTTGGATTCACCTCCACCACTTCTTTCGGGTCCCACGATGATTATACCAGGACCGCCGCCACCGGGACCGCCGACGAAAATGACTCCGCCTGCCACA GTCGCCCCCAGGCAAGACTAAGGGAAGGTGGCGACGATGAGAAGAAGAAAGGAAACGGGAAATCTTCGGTTTCAACCAAGAGAAGTAGAGCTGCTGCCAT TCATAACCAATCTGAACGGAAAAGGAGGGATAAGATTAATCAGAGAATGAAGACATTGCAGAAACTGGTACCAAGTTCCAGCAAGACTGACAAGGCATCA ATGCTGGATGAAGTGATTGATTATTTGAAGCAACTGCAAGCTCAAGTCCAGATGATGAACAGGATGAACATGCAGCCAGCAATGATGCTACCAATGGCGA TGCAACAACAGCTTCAAATGTCAATGATGACCCCGATGAACATCGGGATGGGAATGGGTATGGGGATGGGTATGTTGGACATGAGCTCCATGGCTCGACC CGCCGCGCTTCCCCAGCTACTCCATCAGACTCATCCCTTCATGCCCTCTTGGGACGGAGGCCTCTCTGCTGCCGCGGCCGCCGCCGATCGTTTGCACTCC GCGCCTTCTGCAATCACCCCCGACCCCTTGTCCGCGTTTTTCGCTTCTCAATCCCAGCAGCAGCAGCAGCAGCCGGCCATGAACATGGATGCATACAGCA GAATGGCTGCATTGTACCAACAGCTTCATCAGAAGCCGCCTGGATCTGGTTCCAAGAACTTTTTTTTTATGTTCCAGCAAGCAGCAGCAGCAGCCGGCCA TGAACATGGATGCATACAGCAGAATGGCTGCATTGTACCAACAGCTTCATCAGAAGCCGCCTGGATCTGGTTCCAAGAACTAGAGCCAGCTCATCATCTG ATTCGTGATACGAGGATGATTACCGAGTGGCTAGCCAAGGAAAGACTGAATAGTCTTTCTACTGAAGTTCATCGACAGGCACTGTTAGAAACCGAAAACA ATATTGTGAAACTTGAATTAGTTTTACAAACTATTCGCACTTCTTCGACTGTTGATAGAGGGAAAAGGATCGAGAACCTGTTTCAACACTATGGTTTTGG AAGAGGGGAAACATTAAACGCGATCTACGAGAAGTGGACGAGGAGAGACCGTATTTGA
AA sequence Show only first row Show all	>Lus10028175 pacid=23166386 polypeptide=Lus10028175 locus=Lus10028175.g ID=Lus10028175.BGIv1.0 annot-version=v1.0 MDALVPCSNVVPTTTNVPQDHHRTKAQRVMELAAPVAGMVGSARVGSCSGPVGVLENGRRGGGKVAARPEWSGRDQSACGSASLGRDSQRVTLDTCERDG GVGFTSTTSFGSHDDYTRTAATGTADENDSACHSRPQARLREGGDDEKKKGNGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPSSSKTDKAS MLDEVIDYLKQLQAQVQMMNRMNMQPAMMLPMAMQQQLQMSMMTPMNIGMGMGMGMGMLDMSSMARPAALPQLLHQTHPFMPSWDGGLSAAAAAADRLHS APSAITPDPLSAFFASQSQQQQQQPAMNMDAYSRMAALYQQLHQKPPGSGSKNFFFMFQQAAAAAGHEHGCIQQNGCIVPTASSEAAWIWFQELEPAHHL IRDTRMITEWLAKERLNSLSTEVHRQALLETENNIVKLELVLQTIRTSSTVDRGKRIENLFQHYGFGRGETLNAIYEKWTRRDRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10028175 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	1.0	0.9555
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Lus10034603 [exp]	1.7	0.8907
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	5.9	0.8840
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10009884 [exp]	6.6	0.8887
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	8.2	0.8909
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10000879 [exp]	8.9	0.8598
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	13.3	0.8383
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	14.0	0.8808
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10010914 [exp]	15.0	0.8054
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	15.3	0.8818

Compare expression of checked genes

Lus10028175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.