Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45060 252 / 7e-84 Uncharacterised conserved protein UCP022280 (.1) AT4G26410 100 / 3e-25 Uncharacterised conserved protein UCP022280 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042878 [exp] 431 / 1e-154 AT2G45060 286 / 3e-97 Uncharacterised conserved protein UCP022280 (.1) Lus10034621 [exp] 119 / 5e-32 AT4G26410 241 / 1e-79 Uncharacterised conserved protein UCP022280 (.1) Lus10013474 [exp] 117 / 2e-31 AT4G26410 250 / 1e-83 Uncharacterised conserved protein UCP022280 (.1) Lus10035249 [exp] 115 / 8e-31 AT4G26410 244 / 7e-81 Uncharacterised conserved protein UCP022280 (.1) Lus10007935 [exp] 109 / 8e-29 AT4G26410 207 / 4e-67 Uncharacterised conserved protein UCP022280 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G142900 [exp] 286 / 3e-97 AT2G45060 287 / 2e-97 Uncharacterised conserved protein UCP022280 (.1) Potri.014G058700 [exp] 255 / 3e-85 AT2G45060 293 / 4e-100 Uncharacterised conserved protein UCP022280 (.1) Potri.001G001300 [exp] 124 / 2e-34 AT4G26410 266 / 4e-90 Uncharacterised conserved protein UCP022280 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028177 pacid=23166447 polypeptide=Lus10028177 locus=Lus10028177.g ID=Lus10028177.BGIv1.0 annot-version=v1.0 ATGACGACCGTTGCAGACGCATCGCCGGAGGAGAAACCTAAACCATCACCGCCAAGCAGTTTTCCAGCGGAGATCACCTCGAAAGCACTTGCAGAAGCCG CACCATGGGTCGACCACACCGTACAACAAGCTCTGAGTTACCAAAAGACCGCAGAGGAGAAGCTCGACGCTTTCATTGAAGCAACCAGATCCCGCATCTC TGATATTCGCTCCAGCGGTTCTGCCCACCTTGAACAGACCATCTATTCTATACAATGTGCTGCATCGGAGCTTGGCGTTTATGAGGATTTGGCATTTAAA AAGCTTAACGAGGGTGTACAAATTGCAGCTTCACATCCGTTTATCATGACTGGGGTTACTGCCGGTCCAAGGCGGTTTATTTACTACAAAACCTTGCGTT TTGTATCCAGCGAAGAGACATTGCTTTCCCGTGCCGATGCTAAAGTAAAGGAGTTGCGACAGTCTATGAGCCTCCTCAAGGCTGAAAGTGAAAAACTGGA GCGGAGAGCATCATTAGCAGAAGGAGAGTTCATCCGAGGAACGAAAAAACTGAGACAAACGGGAAAGCAGATCCAGGATGTTATTCGGTCAGCTTATAAG ATTGAAAGACAAGCTGCAGGCTTGAAAGATGTCCTCCAAGAACTGCCTGGTAGGGAAGCATATCGATTTCGGTCACAAGTTAAAGACGTTGCTAATGAGG CGAAGAAAGAGAAGCATGTATTGAGCAAGGAGGTTACAAAGATCAGCAACTATGGGATCTCGGTTGAGATAGATGTGTTGGAGTGGGAGTTAACAAAGGG TGCCTCGCTCTAA
AA sequence Show only first row Show all	>Lus10028177 pacid=23166447 polypeptide=Lus10028177 locus=Lus10028177.g ID=Lus10028177.BGIv1.0 annot-version=v1.0 MTTVADASPEEKPKPSPPSSFPAEITSKALAEAAPWVDHTVQQALSYQKTAEEKLDAFIEATRSRISDIRSSGSAHLEQTIYSIQCAASELGVYEDLAFK KLNEGVQIAASHPFIMTGVTAGPRRFIYYKTLRFVSSEETLLSRADAKVKELRQSMSLLKAESEKLERRASLAEGEFIRGTKKLRQTGKQIQDVIRSAYK IERQAAGLKDVLQELPGREAYRFRSQVKDVANEAKKEKHVLSKEVTKISNYGISVEIDVLEWELTKGASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45060			Uncharacterised conserved prot...		Lus10028177 [exp]	0	1
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	1.4	0.9474
AT5G51170			unknown protein		Lus10031950 [exp]	8.5	0.8605
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10011101 [exp]	9.0	0.9015
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	9.8	0.9203
AT4G34200		EDA9	embryo sac development arrest ...		Lus10027868 [exp]	10.0	0.8996
AT4G00585			unknown protein		Lus10012175 [exp]	11.0	0.8991
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	11.3	0.9094
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10020659 [exp]	15.3	0.8715
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10007370 [exp]	15.5	0.8776
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	16.2	0.9166

Compare expression of checked genes

Lus10028177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.