Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45050 187 / 2e-58 GATA GATA2 GATA transcription factor 2 (.1) AT3G60530 182 / 1e-56 GATA GATA4 GATA transcription factor 4 (.1) AT4G32890 166 / 7e-50 GATA GATA9 GATA transcription factor 9 (.1) AT5G25830 149 / 6e-43 GATA GATA12 GATA transcription factor 12 (.1) AT4G36240 134 / 6e-38 GATA GATA7 GATA transcription factor 7 (.1) AT4G34680 127 / 5e-35 GATA GATA3 GATA transcription factor 3 (.1.2) AT1G08010 127 / 7e-35 GATA GATA11 GATA transcription factor 11 (.1.2) AT3G24050 125 / 2e-34 GATA GATA1 GATA transcription factor 1 (.1) AT5G66320 123 / 5e-33 GATA GATA5 GATA transcription factor 5 (.1.2) AT1G08000 122 / 6e-33 GATA GATA10 GATA transcription factor 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042879 [exp] 190 / 5e-60 AT2G45050 147 / 1e-43 GATA transcription factor 2 (.1) Lus10037572 [exp] 163 / 1e-48 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10038273 [exp] 153 / 1e-44 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10011430 [exp] 151 / 9e-44 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10025829 [exp] 145 / 1e-41 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10023684 [exp] 130 / 5e-37 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10011762 [exp] 127 / 3e-35 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1) Lus10031096 [exp] 119 / 7e-34 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10037994 [exp] 125 / 2e-33 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058600 [exp] 198 / 4e-63 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.002G142800 [exp] 197 / 1e-62 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.018G044900 [exp] 149 / 2e-42 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.006G237700 [exp] 148 / 3e-42 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.001G188500 [exp] 144 / 4e-41 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.003G174800 [exp] 129 / 5e-36 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.008G038900 [exp] 129 / 4e-35 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.001G053500 [exp] 127 / 4e-35 AT3G24050 171 / 4e-52 GATA transcription factor 1 (.1) Potri.010G223300 [exp] 127 / 2e-34 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.004G161500 [exp] 126 / 3e-34 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10028178 pacid=23166541 polypeptide=Lus10028178 locus=Lus10028178.g ID=Lus10028178.BGIv1.0 annot-version=v1.0 ATGGCTCCATCAATCCTCCTCCTCATCCTCCTTCTTCCGACTCCTTCAACTTCCCAATCGACGATCTCCTCGATTTCTCCAACGACGATCTCTTCTCCTC CACCACCACCTCTTCCTCCACCGCCTCCACCTCCGCTCATCTCCCCTCCCTTCCTTCCTTCCNNNNNNNNNNCCCCCTCCCTCCCCCCCCACCACCACCA CCATTCATCCTCCTTTCACCCCGCCGCCCCTGATTTCTCCCCCGACTACTTTGCTCATCAGCTCTCCCTTCCGAACGATGACGTGGCGGAGCTGGAATGG CTGTCCCAATTCGTTGACGATTCCTTCGCCGACTTCCCTCCCAACTCCCTCGCAGCTATCAATGTCGTCCAATCAACCGCGGCTTCCTCCGCCAGCAGAG GCAGAGCAGCTCGCAGCAAGCGATCTAGACTACCAGCAGTCGACGGCGGGGGCGGTGCGGCGTGGAAGGTGGAAGGAGGGGTTAGGAGCAGGGCGTCGTC GCCGACACCGGAGGGGGGAGTGAGGCGGTGCACGCACTGCGCGTCGGAGAAGACGCCGCAGTGGAGGACGGGTCCGATGGGACCGAAAACGCTGTGCAAT GCGTGTGGGGTGAGGTACAAGTCCGGGAGGCTGGTACCGGAGTACAGGCCGGCGGCGAGCCCGACGTTCGTATTGACCCAGCACTCGAACTCCCACCGGA AGGTGGTTGAGCTGCGGAGGCAGAAGGAGATGATGGTGATGCGGCAGCAGTCAGGTGCGGTGGGCAGGGCTAGTACTATGTACAATAATAATCAGGCGGA GGAGCAGGATTTCAATGTTTACTAA
AA sequence Show only first row Show all	>Lus10028178 pacid=23166541 polypeptide=Lus10028178 locus=Lus10028178.g ID=Lus10028178.BGIv1.0 annot-version=v1.0 MAPSILLLILLLPTPSTSQSTISSISPTTISSPPPPPLPPPPPPPLISPPFLPSXXXXPSLPPHHHHHSSSFHPAAPDFSPDYFAHQLSLPNDDVAELEW LSQFVDDSFADFPPNSLAAINVVQSTAASSASRGRAARSKRSRLPAVDGGGGAAWKVEGGVRSRASSPTPEGGVRRCTHCASEKTPQWRTGPMGPKTLCN ACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVVELRRQKEMMVMRQQSGAVGRASTMYNNNQAEEQDFNVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45050	GATA	GATA2	GATA transcription factor 2 (....		Lus10028178 [exp]	0	1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	3.3	0.7958
AT4G35690			Arabidopsis protein of unknown...		Lus10041834 [exp]	11.5	0.7277
AT1G12460			Leucine-rich repeat protein ki...		Lus10007020 [exp]	13.4	0.7466
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10036949 [exp]	16.1	0.7880
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10029156 [exp]	22.0	0.7439
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009432 [exp]	26.5	0.7857
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10008612 [exp]	28.7	0.7402
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	29.2	0.7247
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	30.4	0.7514
AT3G44510			alpha/beta-Hydrolases superfam...		Lus10004879 [exp]	34.3	0.6513

Compare expression of checked genes

Lus10028178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.