Plant FIBer expression Database

Lus10028179 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60520 96 / 3e-26 unknown protein
AT1G02070 86 / 3e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042880
[exp]
154 / 3e-49 AT3G60520 80 / 5e-20 unknown protein
Lus10009267
[exp]
42 / 3e-05 AT1G02070 59 / 3e-11 unknown protein
Lus10015899
[exp]
42 / 3e-05 AT1G02070 58 / 9e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G058300
[exp]
110 / 4e-32 AT3G60520 134 / 2e-41 unknown protein
Potri.002G142600
[exp]
110 / 4e-32 AT3G60520 138 / 4e-43 unknown protein
Potri.005G158400
[exp]
42 / 2e-05 AT1G02070 57 / 8e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10028179 pacid=23166421 polypeptide=Lus10028179 locus=Lus10028179.g ID=Lus10028179.BGIv1.0 annot-version=v1.0
ATGGTCGACGACGATAAGCAGACAGTGTGCTGTATGTGCGGTGACGTAGGGTTCGCCGAAAAGCTCTTCCGCTGCATCAACTGCCGCCACCGTTTCCAGC
ACTCGTACTGCAGCAACTACTACAACAGCAGCAGCCAGTCATCGGAGGCAATCGAAGAGTGCGATTGGTGCCGGAGCGAGGAGATAAAAAATGGCAGCAG
GTCTAGGAAATCGTTTCCGGGCGGAAGTGGGGAAAGTAGTACTAGGTCGGAGTATTCGGGTCAGAAGATGATAAAACAGGAGGAAATTATTAGTAGGGAA
AGGCAGCAGTCAGGTGCGGGCGGGAGGAATAATCACGGCGGACTGCCTTCTCCGAAGACGCGGAGGTACAAGCTCCTCAAGGACGTCATGTGCTAG
AA sequence
>Lus10028179 pacid=23166421 polypeptide=Lus10028179 locus=Lus10028179.g ID=Lus10028179.BGIv1.0 annot-version=v1.0
MVDDDKQTVCCMCGDVGFAEKLFRCINCRHRFQHSYCSNYYNSSSQSSEAIEECDWCRSEEIKNGSRSRKSFPGGSGESSTRSEYSGQKMIKQEEIISRE
RQQSGAGGRNNHGGLPSPKTRRYKLLKDVMC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G60520 unknown protein Lus10028179
[exp]
0 1
AT4G17940 Tetratricopeptide repeat (TPR)... Lus10024949
[exp]
1.7 0.8815
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10023213
[exp]
2.4 0.8978
AT3G01400 ARM repeat superfamily protein... Lus10018685
[exp]
4.5 0.8521
AT5G20650 COPT5 copper transporter 5 (.1) Lus10040925
[exp]
7.1 0.8766
AT4G03510 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) Lus10033697
[exp]
7.5 0.8786
AT4G22240 Plastid-lipid associated prote... Lus10014790
[exp]
8.4 0.8630
AT2G39770 VTC1, SOZ1, GMP... VITAMIN C DEFECTIVE 1, SENSITI... Lus10010880
[exp]
9.4 0.8470
AT1G47410 unknown protein Lus10009767
[exp]
11.0 0.8892
AT1G08250 AtADT6, ADT6 Arabidopsis thaliana arogenate... Lus10019526
[exp]
16.0 0.8609
AT1G47410 unknown protein Lus10006481
[exp]
17.3 0.8672

Lus10028179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.