Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45040 278 / 1e-92 Matrixin family protein (.1) AT4G16640 236 / 2e-76 Matrixin family protein (.1) AT1G70170 200 / 5e-62 MMP matrix metalloproteinase (.1) AT1G24140 192 / 5e-59 Matrixin family protein (.1) AT1G59970 186 / 1e-56 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042881 [exp] 266 / 5e-91 AT2G45040 180 / 1e-56 Matrixin family protein (.1) Lus10028955 [exp] 260 / 3e-85 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 248 / 9e-81 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10004728 [exp] 247 / 3e-80 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10030662 [exp] 183 / 2e-55 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10005605 [exp] 140 / 1e-39 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10014512 [exp] 140 / 1e-39 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10032175 [exp] 139 / 3e-39 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10041294 [exp] 133 / 8e-37 AT1G59970 177 / 3e-53 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058200 [exp] 301 / 1e-101 AT2G45040 358 / 3e-123 Matrixin family protein (.1) Potri.001G157500 [exp] 269 / 5e-89 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.003G077400 [exp] 264 / 8e-86 AT2G45040 330 / 1e-110 Matrixin family protein (.1) Potri.015G103900 [exp] 218 / 6e-69 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.012G104600 [exp] 214 / 3e-67 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.013G100400 [exp] 166 / 1e-49 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.013G033200 [exp] 157 / 5e-46 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.008G027600 [exp] 146 / 6e-42 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.008G027900 [exp] 142 / 1e-40 AT1G59970 192 / 9e-59 Matrixin family protein (.1) Potri.019G073700 [exp] 142 / 2e-40 AT1G59970 213 / 7e-67 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10028180 pacid=23166458 polypeptide=Lus10028180 locus=Lus10028180.g ID=Lus10028180.BGIv1.0 annot-version=v1.0 ATGCTTCTTCTCTACTTCTTCTTCTTCCTCCTCCTATCCATCTCCGCCGCGCCATGCCTCGCATCAAGACCTCCCCCGCACAAGTCAACCTCCGTTGACC CTACCAATTCCATCCACGTGTCGATATGCGGAGTAAAATCGAACCAGAAACCTCCGGAGCTCCGCACTTCTACAAGCTTCGAGTATTTCCCGGGAGAGCC CCGGTGGAATATGCAACTAGAATCCCCACGCGCGAAGCTGACGTACGCCTTCTCCCCTGAAAACACGATCGATTACCTGCCGCTATATTCCATCCGGGAA GCCTTCCGCCGGGCTTTTCAGCGGTGGAGCGCGGTGATTCCGGTGAGCTTTACGGAGGAGGAGGAATACGGGTTCGCCGACGTCAAGATCGGGTTCTACA GCGGGGACCACGGCGACGGGGAGCCGTTCGACGGGGTGCTGGGGGTGCTGGCCCACTCTTTTTCGCCGGAGAGTGGGCGGCTGCACCTCGACGCGGCGGA GAGGTGGGCTTTGGATTTCGCGGTGGAGAAGTCAAAGGTTGCCGTTGACTTGGAGTCCGTGGCGGTCCATGAGATAGGACACGTGTTGGGGCTGGCCCAC TCGGGGGATAAAGATGCGATTATGTATCCTAGCTTGAAGCCCAGGAAGAGAAAAGTTGAGCTTAGCCTTGACGATATAAGGGGGGTTCAGGCTCTGTATG GGTCCAACCCTAACTTTACGATCGGCTCGTTGTCCGAATCTGATATTTCTACGAACCGAGCTGCTCGGGTTGGGTGGACTGGGTCGACTGCGTGGCTGGG CCTGGGATTGCTTTGCTGTGGCTTTGCCCTCTCAGCTGGGCTTGTGTTATAA
AA sequence Show only first row Show all	>Lus10028180 pacid=23166458 polypeptide=Lus10028180 locus=Lus10028180.g ID=Lus10028180.BGIv1.0 annot-version=v1.0 MLLLYFFFFLLLSISAAPCLASRPPPHKSTSVDPTNSIHVSICGVKSNQKPPELRTSTSFEYFPGEPRWNMQLESPRAKLTYAFSPENTIDYLPLYSIRE AFRRAFQRWSAVIPVSFTEEEEYGFADVKIGFYSGDHGDGEPFDGVLGVLAHSFSPESGRLHLDAAERWALDFAVEKSKVAVDLESVAVHEIGHVLGLAH SGDKDAIMYPSLKPRKRKVELSLDDIRGVQALYGSNPNFTIGSLSESDISTNRAARVGWTGSTAWLGLGLLCCGFALSAGLVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	0	1
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	2.0	0.9234
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	2.4	0.9226
AT3G03440			ARM repeat superfamily protein...		Lus10033593 [exp]	3.0	0.8953
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10009261 [exp]	3.0	0.9107
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	4.0	0.9080
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	4.6	0.9023
AT3G52105			unknown protein		Lus10011321 [exp]	4.9	0.8889
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024586 [exp]	5.5	0.9052
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	6.5	0.9037
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	7.4	0.8936

Compare expression of checked genes

Lus10028180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.