Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02065 197 / 9e-61 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G60030 121 / 4e-30 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G20980 119 / 2e-29 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT2G33810 108 / 6e-29 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G53160 108 / 2e-28 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT1G69170 113 / 3e-28 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G47070 113 / 2e-27 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G76580 112 / 4e-27 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G43270 109 / 1e-26 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT3G15270 103 / 2e-26 SBP SPL5 squamosa promoter binding protein-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042882 [exp] 459 / 3e-163 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10021614 [exp] 120 / 1e-30 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10016275 [exp] 115 / 2e-29 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10021034 [exp] 115 / 7e-29 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10018610 [exp] 110 / 1e-28 AT3G15270 127 / 7e-37 squamosa promoter binding protein-like 5 (.1) Lus10039846 [exp] 110 / 1e-28 AT1G53160 129 / 8e-38 squamosa promoter binding protein-like 4 (.1.2) Lus10012020 [exp] 115 / 2e-28 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10023818 [exp] 112 / 5e-28 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10004523 [exp] 114 / 1e-27 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G057700 [exp] 270 / 4e-89 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.002G142200 [exp] 257 / 5e-84 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.003G172600 [exp] 122 / 6e-31 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.002G142400 [exp] 119 / 3e-30 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.016G048500 [exp] 118 / 4e-30 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.014G057800 [exp] 118 / 7e-30 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.018G149900 [exp] 118 / 1e-29 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.004G046700 [exp] 110 / 2e-29 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.010G154000 [exp] 117 / 6e-29 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.007G138800 [exp] 109 / 2e-28 AT3G15270 140 / 4e-42 squamosa promoter binding protein-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10028181 pacid=23166389 polypeptide=Lus10028181 locus=Lus10028181.g ID=Lus10028181.BGIv1.0 annot-version=v1.0 ATGTTGGAGTATGAATGGGCGGCTGCTGCAAATCATTTGATTTCCGGCTCGGACGAACCCAACCAACAAGAATCACCTGACCAATCCCGCCAGATTTTCG ACCATTACTCAAACGCCGCGTCCGCCACTGAAGCTCACCACCACCACTCCTTCACCGACCACAATTCCTTGCTTCCTCCGCAACCACCCTCCGCGGCCTT GTTCCACCACTCTTTCTTCGATCCACGTGGCGCCACCACATATGCTGCTGGCTACGCAACGACAACACACAACCCTTCCTTACTTTCCCTCGACCACCCC TCTGGAAACCCGTATTTCCTGGTTCCGAAGAGCGAGGACGACGGCGGGATGGTCATGACCGCCGCAGCTAGGTCTTCCTCAGATTTCAGCTCCCGGATCG GGCTGAATCTGGGAGGGAGGACCTATTTCTCGTCCACGGAAGACGATTTCGTCAGCCGGCTCTACCGCAGGTCCAGATCCACGCTCCACGAACACGGCGG AGGAGGGATGATGACAAACGCCCCGAGGTGTCAGGCGGAAGGATGCACTGCCGATCTCACCCACGCCAAGCACTACCACCGCCGCCACAAAGTCTGTGAG TTCCACTCCAAGGCCTCCACCGTCCTCGCCGCCGGCCTAACCCAGCGGTTCTGCCAGCAGTGCAGCAGATTCCACCTTCTTTCTGAGTTCGACAATGGGA AGCGAAGCTGTAGAAAGAGGCTGGCCGATCATAACCGTCGCAGGCGAAAATCGAACCAGAATAACACCAATACCAATCAGAGCCAGGAAACCCTCAAGGC GCCGGCCGCCGCCGCCGAAACTGGGTGGAATAATAACTCTCCATCCGACAACCTTACTGAGAGGTCGCCGCCGTCGGAATCCGGGATTCAATCGTGTTCG TCGGTTACAGTGGCGGTGTCGCCTCCTAGGATGTTTCTGGACTGCTTCAAGCAGAGACCGTATGATCAAGCCACGGCTTCCTCTTCGTCTTCGGCATCAT CAAGCTCACTGTTTTTCTTGAGTGGGTGA
AA sequence Show only first row Show all	>Lus10028181 pacid=23166389 polypeptide=Lus10028181 locus=Lus10028181.g ID=Lus10028181.BGIv1.0 annot-version=v1.0 MLEYEWAAAANHLISGSDEPNQQESPDQSRQIFDHYSNAASATEAHHHHSFTDHNSLLPPQPPSAALFHHSFFDPRGATTYAAGYATTTHNPSLLSLDHP SGNPYFLVPKSEDDGGMVMTAAARSSSDFSSRIGLNLGGRTYFSSTEDDFVSRLYRRSRSTLHEHGGGGMMTNAPRCQAEGCTADLTHAKHYHRRHKVCE FHSKASTVLAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSNQNNTNTNQSQETLKAPAAAAETGWNNNSPSDNLTERSPPSESGIQSCS SVTVAVSPPRMFLDCFKQRPYDQATASSSSSASSSSLFFLSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	2.0	0.9626
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	2.2	0.9709
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	3.2	0.9318
AT5G47380			Protein of unknown function, D...		Lus10004732 [exp]	3.6	0.9277
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	6.0	0.9510
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	6.7	0.9525
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	8.4	0.9341
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	8.4	0.9468
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	8.5	0.9377
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	10.8	0.9332

Compare expression of checked genes

Lus10028181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.