Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G31810 447 / 1e-157 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G65940 324 / 1e-109 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30660 315 / 4e-106 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30650 313 / 4e-105 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 271 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 178 / 2e-52 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT4G13360 178 / 3e-52 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G16800 50 / 8e-07 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 45 / 3e-05 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042883 [exp] 586 / 0 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10010685 [exp] 437 / 2e-153 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 431 / 5e-151 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10038717 [exp] 310 / 8e-102 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10020758 [exp] 256 / 2e-82 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007334 [exp] 252 / 3e-81 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10019396 [exp] 157 / 2e-44 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 143 / 1e-38 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10010994 [exp] 60 / 6e-10 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G057400 [exp] 537 / 0 AT3G60510 520 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.018G018800 [exp] 443 / 5e-156 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G156900 [exp] 423 / 4e-148 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.014G179000 [exp] 319 / 2e-107 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 280 / 5e-92 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 281 / 8e-92 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004200 [exp] 273 / 2e-89 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 272 / 3e-89 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 269 / 8e-88 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.002G057700 [exp] 256 / 9e-83 AT1G06550 592 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10028182 pacid=23166475 polypeptide=Lus10028182 locus=Lus10028182.g ID=Lus10028182.BGIv1.0 annot-version=v1.0 ATGGGCGCTCGATTGAACAGATTGTACAAATCGTGGGAAGATGATCCTAATGTTGGATTTGTGGCCATGAAGGGCAGTGGCAGGGCATTTTGCGCTGGTG GGGATATTGTTTCTCTTCATCACTTCATAAACCAGGGGAAGTTCGATAGCTGCAAAGAATTCTTTTCTACATTGTACAGTTATATATACCTGCTAGGTAC ATACTTGAAGCCAAACGTTGCTCTACTGAATGGCATCACTATGGGTGGTGGTGCTGGAGTTTCGATTCCTGGGATGTTTAGGGTTGCGACTGAAAGAACT TTATTTGCTACTCCTGAAACCCTTATTGGTTTTCACCCTGATGCTGGTGCATCATTCTACCTTTCACATTTACCTGGTCATTTAGGTGAATATCTTGCTC TTACGGGTGAGACACTGAAGGGAGCTGAAATGATTGGTTGTGGCTTAGCTACTCATTACACTCACAGTACAAAGCTTGGATTAGTTGAGAGAAAGTTGGC TGATCTGGCCACTGATGATCCTTCTGTAATTGAAACTTCATTAGAAGAATATGGTGACATTGTCCACCCAGATAACATGAGTGTACTTCACAGGATTGAA ACGGTTGATAAATGTTTCAGCCTGAACACAGTTGAAGAAATCATAGATGCTTTGGAAACTGAAGCTGCAGCAACGAATGATCCCTGGTGCAATTCAACAC TGAGAAGACTCGGAGAATGCTCCCCATTGAGTTTAAAGGTTTCATTAAAATCTATACGAGATGGAAGATTTCAGACATTTGATCAGTGCTTAGTCCGTGA ATATAGAATGTCTCTACAGGGGATCTCCCAGCCAGACTTCTGCGAGGGTGTTAGGGCACGTATGGTAGACAAGGACTTGGCTGCAAAGGTACGGTGGAAT CCCCCAAGGTTGGAGCAGGTGACAGATGACATGGTTGATCGTTATTTCGCTCCGCTAAGTGAATCTGAACCGGATCTGGAGCTTCCGACGCAGCAGCGGG AAGCATTTACCTCATAA
AA sequence Show only first row Show all	>Lus10028182 pacid=23166475 polypeptide=Lus10028182 locus=Lus10028182.g ID=Lus10028182.BGIv1.0 annot-version=v1.0 MGARLNRLYKSWEDDPNVGFVAMKGSGRAFCAGGDIVSLHHFINQGKFDSCKEFFSTLYSYIYLLGTYLKPNVALLNGITMGGGAGVSIPGMFRVATERT LFATPETLIGFHPDAGASFYLSHLPGHLGEYLALTGETLKGAEMIGCGLATHYTHSTKLGLVERKLADLATDDPSVIETSLEEYGDIVHPDNMSVLHRIE TVDKCFSLNTVEEIIDALETEAAATNDPWCNSTLRRLGECSPLSLKVSLKSIRDGRFQTFDQCLVREYRMSLQGISQPDFCEGVRARMVDKDLAAKVRWN PPRLEQVTDDMVDRYFAPLSESEPDLELPTQQREAFTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60510			ATP-dependent caseinolytic (Cl...		Lus10028182 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	3.0	0.9446
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	4.0	0.9285
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10012202 [exp]	5.5	0.9273
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	5.7	0.9292
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	5.8	0.9343
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10028538 [exp]	9.7	0.8903
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10012566 [exp]	10.8	0.9056
AT4G02120			CTP synthase family protein (....		Lus10010020 [exp]	12.2	0.9097
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	13.1	0.9239
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	15.9	0.9175

Compare expression of checked genes

Lus10028182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.