Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2) AT5G51400 280 / 6e-96 PLAC8 family protein (.1) AT2G40935 97 / 1e-24 PLAC8 family protein (.1.2.3) AT1G49030 65 / 1e-12 PLAC8 family protein (.1) AT1G14870 62 / 4e-12 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT3G18450 62 / 1e-11 PLAC8 family protein (.1) AT1G14880 59 / 7e-11 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT5G35525 58 / 1e-10 PLAC8 family protein (.1) AT3G18460 58 / 3e-10 PLAC8 family protein (.1) AT1G68630 55 / 2e-09 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042885 [exp] 476 / 2e-173 AT2G45010 323 / 1e-112 PLAC8 family protein (.1.2) Lus10027214 [exp] 317 / 2e-110 AT2G45010 336 / 1e-117 PLAC8 family protein (.1.2) Lus10038926 [exp] 318 / 4e-109 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10031733 [exp] 279 / 1e-95 AT2G45010 313 / 3e-109 PLAC8 family protein (.1.2) Lus10005257 [exp] 79 / 1e-17 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10019478 [exp] 72 / 2e-15 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 69 / 3e-14 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10004063 [exp] 66 / 2e-13 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10009036 [exp] 61 / 1e-11 AT1G68630 122 / 2e-36 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108800 [exp] 322 / 2e-112 AT5G51400 339 / 4e-119 PLAC8 family protein (.1) Potri.002G141600 [exp] 321 / 4e-112 AT2G45010 303 / 6e-105 PLAC8 family protein (.1.2) Potri.001G124500 [exp] 312 / 1e-108 AT5G51400 330 / 1e-115 PLAC8 family protein (.1) Potri.006G024900 [exp] 90 / 5e-22 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.010G108800 [exp] 74 / 3e-16 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 72 / 2e-15 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 72 / 2e-15 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 71 / 5e-15 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 67 / 1e-13 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 67 / 2e-13 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10028184 pacid=23166474 polypeptide=Lus10028184 locus=Lus10028184.g ID=Lus10028184.BGIv1.0 annot-version=v1.0 ATGGGAGACAGCGGAAGCGTTCAATCAAGATACGTGAAGTTAACAAAAGAACAGGCCCCGCCTACTGAAGACATCACTCCCGGAGAACTCAACCAGCCAA TCCAAGTCCCTCAGCTAATCATCCACAGATGCAACGAATGCGGACAACCTCTACCAGAGAGCTACGAGCCTCCAGCCGACGAGGACTGGGCCACCAGCAT ATGCGCCTGCACCGAAGATTTCGAAAGCTGTCGGACGGGGTTTTTCTGTCCGTGCGTGTTGTTCGGACAGAACGTCGAGACATTGAGAGAAGACATACCG TGGAACAATGCATGCATGTGTCACGCGATATGCGTGGAAGGAGGAGTGGCTATGGCAGCGGCCACATTGCTGTTTGGAGGTATAGACATCAGGACATCAT TCCTTATCTGTGAAGGATTGTTCTTCGCTTGGTGGATGTGCGGAATTTACACCGGACTGTTTCGACAATCGCTCCAGAAGAAGTACCATCTCAAGGACTC TCCGTGCGATCCGTGTCTAGTGCACTGCTGCCTGCACTGGTGTGCACTTTGTCAAGAACATAGGGAGATGAGGAACCATCTCTCCGACCAAGCCTCGTTG TTGCAGATGACTGTCATCAACCCTCCTTTAGTCCAGCAAATGACCAGTACCAATGCACAACCAGTCATATCAGACAGTGGCCATGTCACTCTCGAGATAC GACCTGTTTAG
AA sequence Show only first row Show all	>Lus10028184 pacid=23166474 polypeptide=Lus10028184 locus=Lus10028184.g ID=Lus10028184.BGIv1.0 annot-version=v1.0 MGDSGSVQSRYVKLTKEQAPPTEDITPGELNQPIQVPQLIIHRCNECGQPLPESYEPPADEDWATSICACTEDFESCRTGFFCPCVLFGQNVETLREDIP WNNACMCHAICVEGGVAMAAATLLFGGIDIRTSFLICEGLFFAWWMCGIYTGLFRQSLQKKYHLKDSPCDPCLVHCCLHWCALCQEHREMRNHLSDQASL LQMTVINPPLVQQMTSTNAQPVISDSGHVTLEIRPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45010			PLAC8 family protein (.1.2)		Lus10028184 [exp]	0	1
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010645 [exp]	2.0	0.8911
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10013950 [exp]	4.2	0.8915
AT1G49000			unknown protein		Lus10042953 [exp]	4.9	0.8768
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	5.8	0.9100
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	6.2	0.8980
					Lus10041616 [exp]	10.0	0.8848
AT1G10380			Putative membrane lipoprotein ...		Lus10037237 [exp]	12.7	0.8694
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10015843 [exp]	14.3	0.8827
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10015232 [exp]	17.6	0.8620
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	22.0	0.8809

Compare expression of checked genes

Lus10028184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.