Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44970 619 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25170 56 / 4e-08 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) AT5G61490 55 / 6e-08 Uncharacterised conserved protein (UCP012943) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042889 [exp] 902 / 0 AT2G44970 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10011122 [exp] 438 / 7e-148 AT2G44970 425 / 3e-145 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009654 [exp] 69 / 3e-12 AT4G25170 174 / 1e-51 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Lus10009018 [exp] 64 / 2e-10 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G055900 [exp] 674 / 0 AT2G44970 639 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G085600 [exp] 471 / 3e-159 AT2G44970 470 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G057200 [exp] 105 / 4e-25 AT5G61490 86 / 1e-19 Uncharacterised conserved protein (UCP012943) (.1) Potri.001G126300 [exp] 65 / 4e-11 AT4G25170 184 / 3e-55 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.003G107400 [exp] 61 / 1e-09 AT4G25170 190 / 1e-57 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.011G130000 [exp] 46 / 5e-05 AT5G54540 111 / 3e-28 Uncharacterised conserved protein (UCP012943) (.1) Potri.001G410100 [exp] 44 / 0.0002 AT5G54540 121 / 4e-32 Uncharacterised conserved protein (UCP012943) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028185 pacid=23166426 polypeptide=Lus10028185 locus=Lus10028185.g ID=Lus10028185.BGIv1.0 annot-version=v1.0 ATGGATCCTCCTCCCCAAAACAAATCTTCTTCTTCTTCTGCACTTGACTTGCCACCAACTGGGTCTTGTTCATTTGACATTCTGGGACCAGTCCCATCCC AGGAAGAAGTCCGATCCGCCATAGACTCACTACAAAGTTTCATGCATCAGATATCGGAGCTGCAACCGGAGAAGAAGCCATCCAATGGATCCAAAAGAGT TAGCGACGCTTTTCAGCTCCTTCAGTCAGATCCAGCCATTCAGAAACTTGTGGCTGCTCTGGCAACCGATAAGGCGGTCTGGGATGCCGTCAAGAAAAAC GAAATGGTGCAGAAGAAACTGCAGCAGCCAGGCCTTCCAGGGGAGAGCTTCAAACTCCACGGCGGCAACTGCAAACAAAAAGGAGAAACGACATGCGATT CCGACCAAGCTAACCATTTGTTGAGATGGATAATGAACATTGCTTCCAGGATCACTGAACTCATCCAGAAATGGCAAGCTCTTGTACATGTTGTTCGTCA TCCCTTCGATTTCGATGGTGGACCGCCGCCATCGGAGCAGCTGTTGATGGATCAGAGAGCTGGGTTGCCATTGCTACTCGCTGTTGTCACCCTCCTCATT GTACAGCAGGATACTGCCCACAGCAATGATAGTGCCGCTGGTCCGCAGCTATTCACTTCCGTTCCAAGTCTGAATGAAGCTGCTAATTATCTTTCCCAAA CAACTTCCTTGATTACCAGTTGCTTCCCTTCAGTGGAGTTTCCTGCGAGAGATTTTGGATATTCAGTCCCTCGTGAGCAGGAATTGTTATCAACCTCTCG TGCTCAAACTCAGCAATCTTCAGCGGGCACCGCATCTTCGGGCCCATCAACTTTTGCCCGCAGTCCTCCTTCTGTTGACCGAGTAACTAGAACTTCTTCC GCCACCCCATCTGAAGATACCGGTGCACTTGTACCATATAGTGGTCTGAACGGAATTTCAATATTTCAAGGACTTATTGAGAGGGCACGTAGAACTGTTC GTGGGTCTGCTGATGATATAGGGTGGCTACAACGTGCACCAGGGATGCCTCCGGTTGAAGATGGAACTGAAAGGTTTATGGAGATTCTTAATAGCATAAG GCATGGTGTGCACAGGTTGCCCCAGACTATGGTTTACTTGTTAGTTCCAGGGCTCTTCAGCAACCATGGACCACTTTATTTTGTTAATACGAAACAGTTT TTTTCAAAGATGGGTCTCACTTGTCACATTGCCAAGATTCACAGCGAGGCATCAGTTGAGAAAAATGCCAGAGAGATTAAAGAATACATTGAGGAAATGT ATTGGGGCTCAAATAAACGTGTGATGCTTCTTGGACATAGTAAAGGCGGTATAGACTCGGCTGCTGCTCTGTCATTGTACTGGCCTGACTTGCAAGATAA GGTAGCTGGACTAGTACTGTCGCAAAGTCCTTATGGCGGTAGCCCAATTGCATCCGATATTTTACGTGAAGGGCAACTTGGTGACTATGTTAATGTACGG AAACTCATGGAGATTATCATATGCAAAGTAATTAAGCATCACCCGAAACTTGTAAAGGGTGATATGCAAGCCTTGGAAGATCTAACATACGAGAAGAGGA GAGATTTCTTGACGAAACACCCGTTGCCACAAGAGCTTCCAGTTGTATCGTTCCACACGGAAGCCAGCGTTTCACCAGCAGTTCTGGCTACGCTTTCTCG GGTAGCTCATGCAGAGTTGCCAATAGTTGCGCCTTTATCCTCTGGCGAGGCAACTAAACTCCCAGTTGTGATGCCTCTTGGTGCTGCTATGGCGGCTTGT GCTCAGCTGCTCCAAGTCCGGTATGGTGAGAAGAGTGATGGACTCGTGACTCGTCGGGACGCGGAGGTCCCTGGATCTGTGGTGGTGCGACCAGCTAGGA AACTAGACCATGCCTGGATGGTGTATTCATCATTGAACGACGATCCTTCCGAGGCAGATGCTTCTCAAGTTTGCGAAGCTTTGCTGGAATTGTTGGTTGA AGTTGGGATGAAGAAAAGGCATCAAATTGAGAGGAAACAGGAATAA
AA sequence Show only first row Show all	>Lus10028185 pacid=23166426 polypeptide=Lus10028185 locus=Lus10028185.g ID=Lus10028185.BGIv1.0 annot-version=v1.0 MDPPPQNKSSSSSALDLPPTGSCSFDILGPVPSQEEVRSAIDSLQSFMHQISELQPEKKPSNGSKRVSDAFQLLQSDPAIQKLVAALATDKAVWDAVKKN EMVQKKLQQPGLPGESFKLHGGNCKQKGETTCDSDQANHLLRWIMNIASRITELIQKWQALVHVVRHPFDFDGGPPPSEQLLMDQRAGLPLLLAVVTLLI VQQDTAHSNDSAAGPQLFTSVPSLNEAANYLSQTTSLITSCFPSVEFPARDFGYSVPREQELLSTSRAQTQQSSAGTASSGPSTFARSPPSVDRVTRTSS ATPSEDTGALVPYSGLNGISIFQGLIERARRTVRGSADDIGWLQRAPGMPPVEDGTERFMEILNSIRHGVHRLPQTMVYLLVPGLFSNHGPLYFVNTKQF FSKMGLTCHIAKIHSEASVEKNAREIKEYIEEMYWGSNKRVMLLGHSKGGIDSAAALSLYWPDLQDKVAGLVLSQSPYGGSPIASDILREGQLGDYVNVR KLMEIIICKVIKHHPKLVKGDMQALEDLTYEKRRDFLTKHPLPQELPVVSFHTEASVSPAVLATLSRVAHAELPIVAPLSSGEATKLPVVMPLGAAMAAC AQLLQVRYGEKSDGLVTRRDAEVPGSVVVRPARKLDHAWMVYSSLNDDPSEADASQVCEALLELLVEVGMKKRHQIERKQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10028185 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039430 [exp]	1.4	0.7384
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10030303 [exp]	4.0	0.6795
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10033120 [exp]	11.0	0.6708
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	20.8	0.6763
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10040285 [exp]	20.9	0.6783
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	28.4	0.6587
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10008148 [exp]	30.6	0.6430
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	34.7	0.6648
AT1G62760			Plant invertase/pectin methyle...		Lus10032232 [exp]	34.8	0.5963
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	35.5	0.6267

Compare expression of checked genes

Lus10028185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.